Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 12 studies | 33% ± 14% | |
astrocyte | 10 studies | 28% ± 12% | |
glutamatergic neuron | 7 studies | 42% ± 17% | |
oligodendrocyte precursor cell | 7 studies | 30% ± 13% | |
epithelial cell of proximal tubule | 6 studies | 57% ± 25% | |
oligodendrocyte | 6 studies | 25% ± 6% | |
interneuron | 5 studies | 41% ± 20% | |
epithelial cell | 5 studies | 19% ± 3% | |
fibroblast | 5 studies | 21% ± 6% | |
GABAergic neuron | 5 studies | 43% ± 19% | |
neuron | 4 studies | 32% ± 11% | |
granule cell | 4 studies | 28% ± 6% | |
endothelial cell of lymphatic vessel | 4 studies | 28% ± 4% | |
macrophage | 3 studies | 25% ± 7% | |
microglial cell | 3 studies | 25% ± 7% | |
smooth muscle cell | 3 studies | 19% ± 1% | |
transit amplifying cell | 3 studies | 22% ± 5% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
pancreas | 100% | 4600.48 | 328 / 328 | 100% | 25.08 | 178 / 178 |
brain | 100% | 7467.70 | 2641 / 2642 | 100% | 61.96 | 705 / 705 |
prostate | 100% | 5617.18 | 245 / 245 | 100% | 45.07 | 501 / 502 |
kidney | 100% | 15209.11 | 89 / 89 | 100% | 68.24 | 897 / 901 |
thymus | 100% | 4777.85 | 653 / 653 | 100% | 34.81 | 602 / 605 |
skin | 100% | 3523.11 | 1808 / 1809 | 99% | 33.34 | 467 / 472 |
breast | 100% | 3652.46 | 459 / 459 | 98% | 41.63 | 1100 / 1118 |
adrenal gland | 100% | 5411.98 | 258 / 258 | 98% | 30.73 | 225 / 230 |
bladder | 100% | 5708.81 | 21 / 21 | 98% | 24.12 | 492 / 504 |
lung | 100% | 4571.37 | 577 / 578 | 96% | 23.15 | 1107 / 1155 |
ovary | 100% | 5834.60 | 180 / 180 | 95% | 20.86 | 408 / 430 |
intestine | 100% | 4973.12 | 966 / 966 | 95% | 25.49 | 500 / 527 |
stomach | 99% | 3295.50 | 356 / 359 | 95% | 25.68 | 273 / 286 |
uterus | 100% | 5763.68 | 170 / 170 | 94% | 24.80 | 431 / 459 |
esophagus | 99% | 5004.45 | 1426 / 1445 | 95% | 19.81 | 174 / 183 |
liver | 100% | 3325.24 | 226 / 226 | 92% | 17.63 | 372 / 406 |
adipose | 100% | 4214.13 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 25.96 | 80 / 80 |
muscle | 100% | 4948.14 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 4586.02 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 16.01 | 1 / 1 |
blood vessel | 100% | 6584.69 | 1334 / 1335 | 0% | 0 | 0 / 0 |
heart | 99% | 3338.92 | 852 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 93% | 15.90 | 27 / 29 |
tonsil | 0% | 0 | 0 / 0 | 87% | 14.02 | 39 / 45 |
peripheral blood | 34% | 673.92 | 315 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0061512 | Biological process | protein localization to cilium |
GO_0070164 | Biological process | negative regulation of adiponectin secretion |
GO_0060627 | Biological process | regulation of vesicle-mediated transport |
GO_0051301 | Biological process | cell division |
GO_1903438 | Biological process | positive regulation of mitotic cytokinetic process |
GO_1902017 | Biological process | regulation of cilium assembly |
GO_0032456 | Biological process | endocytic recycling |
GO_0061502 | Biological process | early endosome to recycling endosome transport |
GO_0016192 | Biological process | vesicle-mediated transport |
GO_1902954 | Biological process | regulation of early endosome to recycling endosome transport |
GO_0045724 | Biological process | positive regulation of cilium assembly |
GO_1905345 | Biological process | protein localization to cleavage furrow |
GO_1904779 | Biological process | regulation of protein localization to centrosome |
GO_0043001 | Biological process | Golgi to plasma membrane protein transport |
GO_2001135 | Biological process | regulation of endocytic recycling |
GO_0032465 | Biological process | regulation of cytokinesis |
GO_0030496 | Cellular component | midbody |
GO_0034451 | Cellular component | centriolar satellite |
GO_0030139 | Cellular component | endocytic vesicle |
GO_0055037 | Cellular component | recycling endosome |
GO_0005739 | Cellular component | mitochondrion |
GO_0030666 | Cellular component | endocytic vesicle membrane |
GO_0005813 | Cellular component | centrosome |
GO_0055038 | Cellular component | recycling endosome membrane |
GO_0005654 | Cellular component | nucleoplasm |
GO_0045171 | Cellular component | intercellular bridge |
GO_0032588 | Cellular component | trans-Golgi network membrane |
GO_0000139 | Cellular component | Golgi membrane |
GO_0005829 | Cellular component | cytosol |
GO_0043231 | Cellular component | intracellular membrane-bounded organelle |
GO_0032154 | Cellular component | cleavage furrow |
GO_0005768 | Cellular component | endosome |
GO_0098944 | Cellular component | postsynaptic recycling endosome membrane |
GO_0042803 | Molecular function | protein homodimerization activity |
GO_0060090 | Molecular function | molecular adaptor activity |
GO_0044877 | Molecular function | protein-containing complex binding |
GO_0042802 | Molecular function | identical protein binding |
GO_0031267 | Molecular function | small GTPase binding |
GO_0030674 | Molecular function | protein-macromolecule adaptor activity |
GO_0051959 | Molecular function | dynein light intermediate chain binding |
GO_0005509 | Molecular function | calcium ion binding |
GO_0005515 | Molecular function | protein binding |
Gene name | RAB11FIP3 |
Protein name | RAB11 family interacting protein 3 Rab11 family-interacting protein 3 Rab11 family-interacting protein 3 (FIP3) (FIP3-Rab11) (Rab11-FIP3) (Arfophilin-1) (EF hands-containing Rab-interacting protein) (Eferin) (MU-MB-17.148) |
Synonyms | KIAA0665 ARFO1 |
Description | FUNCTION: Downstream effector molecule for Rab11 GTPase which is involved in endocytic trafficking, cytokinesis and intracellular ciliogenesis by participating in membrane delivery . Recruited by Rab11 to endosomes where it links Rab11 to dynein motor complex . The functional Rab11-RAB11FIP3-dynein complex regulates the movement of peripheral sorting endosomes (SE) along microtubule tracks toward the microtubule organizing center/centrosome, generating the endocytic recycling compartment (ERC) during interphase of cell cycle . Facilitates the interaction between dynein and dynactin and activates dynein processivity . Binding with ASAP1 is needed to regulate the pericentrosomal localization of recycling endosomes (By similarity). The Rab11-RAB11FIP3 complex is also implicated in the transport during telophase of vesicles derived from recycling endosomes to the cleavage furrow via centrosome-anchored microtubules, where the vesicles function to deliver membrane during late cytokinesis and abscission . The recruitment of Rab11-RAB11FIP3-containing endosomes to the cleavage furrow and tethering to the midbody is co-mediated by RAB11FIP3 interaction with ARF6-exocyst and RACGAP1-MKLP1 tethering complexes . Also involved in the Rab11-Rabin8-Rab8 ciliogenesis cascade by facilitating the orderly assembly of a ciliary targeting complex containing Rab11, ASAP1, Rabin8/RAB3IP, RAB11FIP3 and ARF4, which directs preciliary vesicle trafficking to mother centriole and ciliogenesis initiation . Also promotes the activity of Rab11 and ASAP1 in the ARF4-dependent Golgi-to-cilia transport of the sensory receptor rhodopsin . Competes with WDR44 for binding to Rab11, which controls intracellular ciliogenesis pathway . May play a role in breast cancer cell motility by regulating actin cytoskeleton . . |
Accessions | ENST00000449879.6 A0A0J9YY48 O75154 A0A0J9YWV4 A0A0J9YWM0 ENST00000611004.4 [O75154-1] ENST00000450428.5 [O75154-2] ENST00000434585.6 [O75154-3] H0Y7F9 ENST00000633920.1 ENST00000633334.1 ENST00000262305.9 [O75154-1] ENST00000434585.6 X6RFI8 ENST00000452814.5 A0A0J9YXZ3 ENST00000412256.1 ENST00000632539.1 F6X994 A0A0A0MSV1 ENST00000631977.1 ENST00000610934.1 [O75154-2] |