PRTG report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
retinal cone cell	7 studies	40% ± 16%	Explore
endothelial cell	5 studies	27% ± 11%	Explore
oligodendrocyte precursor cell	5 studies	27% ± 7%	Explore
type II pneumocyte	5 studies	27% ± 6%	Explore
astrocyte	5 studies	44% ± 21%	Explore
retinal rod cell	4 studies	30% ± 10%	Explore
interneuron	3 studies	22% ± 7%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
eye	3 studies	27% ± 4%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
thymus	100%	3808.45	653 / 653	78%	3.82	471 / 605
brain	89%	180.12	2364 / 2642	82%	2.40	575 / 705
adrenal gland	99%	257.92	255 / 258	58%	2.46	134 / 230
breast	100%	312.96	457 / 459	36%	0.86	408 / 1118
lung	98%	495.77	568 / 578	27%	0.71	313 / 1155
kidney	100%	305.88	89 / 89	14%	0.30	124 / 901
ovary	100%	629.10	180 / 180	14%	0.31	59 / 430
uterus	99%	1088.14	169 / 170	14%	0.30	63 / 459
bladder	95%	208.57	20 / 21	14%	0.33	72 / 504
prostate	94%	178.31	231 / 245	11%	0.17	53 / 502
skin	39%	73.80	700 / 1809	62%	2.49	291 / 472
stomach	83%	175.01	299 / 359	13%	0.27	38 / 286
adipose	93%	178.81	1120 / 1204	0%	0	0 / 0
heart	92%	150.96	791 / 861	0%	0	0 / 0
intestine	87%	209.25	839 / 966	4%	0.10	23 / 527
blood vessel	87%	158.94	1159 / 1335	0%	0	0 / 0
esophagus	70%	108.06	1008 / 1445	15%	0.28	27 / 183
muscle	82%	155.40	657 / 803	0%	0	0 / 0
eye	0%	0	0 / 0	79%	2.69	63 / 80
pancreas	7%	8.07	24 / 328	6%	0.14	10 / 178
spleen	12%	12.35	29 / 241	0%	0	0 / 0
lymph node	0%	0	0 / 0	10%	0.61	3 / 29
liver	5%	4.79	12 / 226	3%	0.06	13 / 406
tonsil	0%	0	0 / 0	4%	0.05	2 / 45
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
peripheral blood	0%	0	0 / 929	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1