Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 4 studies | 26% ± 6% | |
oligodendrocyte | 4 studies | 21% ± 4% | |
ciliated cell | 3 studies | 19% ± 3% | |
epithelial cell | 3 studies | 20% ± 2% | |
GABAergic neuron | 3 studies | 31% ± 2% | |
glutamatergic neuron | 3 studies | 37% ± 3% | |
oligodendrocyte precursor cell | 3 studies | 25% ± 5% | |
adipocyte | 3 studies | 21% ± 2% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 30% ± 5% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 2778.76 | 245 / 245 | 100% | 9.76 | 502 / 502 |
brain | 100% | 1299.88 | 2629 / 2642 | 100% | 9.88 | 704 / 705 |
breast | 100% | 2657.75 | 459 / 459 | 99% | 12.41 | 1106 / 1118 |
thymus | 100% | 4729.00 | 653 / 653 | 99% | 10.43 | 597 / 605 |
kidney | 100% | 2051.33 | 89 / 89 | 97% | 9.45 | 877 / 901 |
lung | 99% | 1746.14 | 575 / 578 | 96% | 6.01 | 1106 / 1155 |
adrenal gland | 100% | 1939.36 | 258 / 258 | 95% | 6.72 | 219 / 230 |
pancreas | 100% | 1564.66 | 328 / 328 | 93% | 5.11 | 165 / 178 |
bladder | 100% | 2077.14 | 21 / 21 | 90% | 5.50 | 453 / 504 |
uterus | 100% | 2677.79 | 170 / 170 | 88% | 5.02 | 405 / 459 |
esophagus | 99% | 1574.55 | 1437 / 1445 | 87% | 4.13 | 159 / 183 |
skin | 100% | 1603.27 | 1802 / 1809 | 86% | 5.54 | 406 / 472 |
ovary | 100% | 2874.68 | 180 / 180 | 85% | 3.81 | 365 / 430 |
stomach | 100% | 1496.16 | 358 / 359 | 78% | 3.17 | 224 / 286 |
intestine | 100% | 1827.99 | 966 / 966 | 74% | 2.93 | 388 / 527 |
liver | 94% | 771.75 | 212 / 226 | 53% | 2.19 | 214 / 406 |
spleen | 100% | 1989.44 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 2.74 | 1 / 1 |
adipose | 100% | 2320.25 | 1203 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1773.69 | 1332 / 1335 | 0% | 0 | 0 / 0 |
heart | 95% | 944.71 | 821 / 861 | 0% | 0 | 0 / 0 |
muscle | 83% | 535.08 | 667 / 803 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 82% | 3.44 | 37 / 45 |
lymph node | 0% | 0 | 0 / 0 | 79% | 3.99 | 23 / 29 |
eye | 0% | 0 | 0 / 0 | 56% | 3.28 | 45 / 80 |
peripheral blood | 51% | 506.26 | 477 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006281 | Biological process | DNA repair |
GO_0019985 | Biological process | translesion synthesis |
GO_0006260 | Biological process | DNA replication |
GO_0042276 | Biological process | error-prone translesion synthesis |
GO_0016607 | Cellular component | nuclear speck |
GO_0005654 | Cellular component | nucleoplasm |
GO_0036464 | Cellular component | cytoplasmic ribonucleoprotein granule |
GO_0003887 | Molecular function | DNA-directed DNA polymerase activity |
GO_0005515 | Molecular function | protein binding |
GO_0003684 | Molecular function | damaged DNA binding |
GO_0046872 | Molecular function | metal ion binding |
Gene name | POLI |
Protein name | DNA polymerase iota DNA polymerase iota (EC 2.7.7.7) (Eta2) (RAD30 homolog B) |
Synonyms | RAD30B |
Description | FUNCTION: Error-prone DNA polymerase specifically involved in DNA repair . Plays an important role in translesion synthesis, where the normal high-fidelity DNA polymerases cannot proceed and DNA synthesis stalls . Favors Hoogsteen base-pairing in the active site . Inserts the correct base with high-fidelity opposite an adenosine template . Exhibits low fidelity and efficiency opposite a thymidine template, where it will preferentially insert guanosine . May play a role in hypermutation of immunoglobulin genes . Forms a Schiff base with 5'-deoxyribose phosphate at abasic sites, but may not have lyase activity . . |
Accessions | X6R2I3 J3QQZ8 Q9UNA4 ENST00000579434.5 J3KRS8 ENST00000217800.9 ENST00000579534.6 J3QR36 ENST00000585023.5 ENST00000580880.1 J3KTN3 ENST00000581950.5 ENST00000579823.1 ENST00000406285.7 J3KRG0 J3KTM8 ENST00000583136.5 J3KQ09 J3KSW2 ENST00000577612.5 |