Name | Number of supported studies  | Average coverage | |
|---|---|---|---|
| astrocyte | 7 studies | 34% ± 16% | |
| basal cell | 5 studies | 27% ± 14% | |
| epithelial cell | 4 studies | 37% ± 23% | |
| retinal rod cell | 4 studies | 25% ± 3% | |
| fibroblast | 4 studies | 22% ± 3% | |
| Mueller cell | 3 studies | 29% ± 13% |
Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| eye | 3 studies | 21% ± 4% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| thymus | 100% | 3007.82 | 652 / 653 | 92% | 29.76 | 554 / 605 |
| brain | 97% | 1483.66 | 2574 / 2642 | 91% | 22.68 | 640 / 705 |
| ovary | 99% | 2502.33 | 179 / 180 | 82% | 19.57 | 351 / 430 |
| prostate | 100% | 2411.56 | 245 / 245 | 81% | 27.73 | 405 / 502 |
| pancreas | 100% | 2384.27 | 328 / 328 | 75% | 10.95 | 133 / 178 |
| breast | 100% | 2349.40 | 459 / 459 | 67% | 22.69 | 745 / 1118 |
| uterus | 100% | 2010.48 | 170 / 170 | 62% | 19.19 | 284 / 459 |
| liver | 99% | 2523.88 | 224 / 226 | 60% | 12.17 | 245 / 406 |
| kidney | 100% | 2662.70 | 89 / 89 | 55% | 13.21 | 498 / 901 |
| lung | 99% | 1620.23 | 573 / 578 | 54% | 9.96 | 622 / 1155 |
| skin | 100% | 1975.40 | 1800 / 1809 | 31% | 3.86 | 148 / 472 |
| bladder | 100% | 1635.52 | 21 / 21 | 25% | 4.14 | 128 / 504 |
| esophagus | 100% | 1341.29 | 1442 / 1445 | 21% | 3.54 | 39 / 183 |
| stomach | 100% | 1572.00 | 359 / 359 | 20% | 2.63 | 58 / 286 |
| adrenal gland | 98% | 1520.23 | 253 / 258 | 14% | 1.71 | 32 / 230 |
| intestine | 92% | 1143.99 | 893 / 966 | 12% | 1.54 | 65 / 527 |
| adipose | 100% | 1741.94 | 1203 / 1204 | 0% | 0 | 0 / 0 |
| blood vessel | 100% | 1848.01 | 1332 / 1335 | 0% | 0 | 0 / 0 |
| eye | 0% | 0 | 0 / 0 | 99% | 20.75 | 79 / 80 |
| spleen | 98% | 955.02 | 236 / 241 | 0% | 0 | 0 / 0 |
| heart | 96% | 1359.86 | 827 / 861 | 0% | 0 | 0 / 0 |
| muscle | 95% | 1002.26 | 762 / 803 | 0% | 0 | 0 / 0 |
| lymph node | 0% | 0 | 0 / 0 | 52% | 9.31 | 15 / 29 |
| tonsil | 0% | 0 | 0 / 0 | 36% | 6.33 | 16 / 45 |
| peripheral blood | 3% | 29.89 | 27 / 929 | 0% | 0 | 0 / 0 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
| GO_0016706 | Molecular function | 2-oxoglutarate-dependent dioxygenase activity |
| GO_0046872 | Molecular function | metal ion binding |
| GO_0005515 | Molecular function | protein binding |
| Gene name | PHYHD1 |
| Protein name | Phytanoyl-CoA dioxygenase domain-containing protein 1 Phytanoyl-CoA dioxygenase domain-containing protein 1 (Protein PHYHD1) (EC 1.14.11.-) Phytanoyl-CoA dioxygenase domain containing 1 |
| Synonyms | hCG_30598 |
| Description | FUNCTION: 2-oxoglutarate(2OG)-dependent dioxygenase that catalyzes the conversion of 2-oxoglutarate to succinate and CO(2) in an iron-dependent manner . However, does not couple 2OG turnover to the hydroxylation of acyl-coenzyme A derivatives, implying that it is not directly involved in phytanoyl coenzyme-A metabolism . Does not show detectable activity towards fatty acid CoA thioesters . .; FUNCTION: [Isoform 2]: Isoform 2 probably lacks enzyme activity. .; FUNCTION: [Isoform 3]: Isoform 3 probably lacks enzyme activity. . |
| Accessions | ENST00000353176.9 [Q5SRE7-2] X6RCI6 ENST00000308941.9 [Q5SRE7-3] ENST00000424503.1 ENST00000442837.5 ENST00000451000.5 H7C2Q0 ENST00000426694.5 Q5SRE7 ENST00000419552.5 X6RJK6 X6RFQ9 ENST00000372592.8 [Q5SRE7-1] H7C3M4 ENST00000421063.6 [Q5SRE7-2] I7HJS6 ENST00000412476.5 G5E9M0 F8WCG7 ENST00000428610.5 ENST00000419872.1 |
