Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| oligodendrocyte precursor cell | 13 studies | 36% ± 16% | |
| glutamatergic neuron | 11 studies | 37% ± 23% | |
| astrocyte | 11 studies | 28% ± 10% | |
| GABAergic neuron | 10 studies | 42% ± 20% | |
| fibroblast | 9 studies | 23% ± 7% | |
| oligodendrocyte | 8 studies | 25% ± 8% | |
| endothelial cell | 7 studies | 31% ± 15% | |
| epithelial cell | 6 studies | 23% ± 9% | |
| interneuron | 6 studies | 56% ± 16% | |
| ciliated cell | 6 studies | 28% ± 12% | |
| neuron | 5 studies | 34% ± 15% | |
| pericyte | 5 studies | 29% ± 15% | |
| granule cell | 4 studies | 27% ± 9% | |
| amacrine cell | 4 studies | 26% ± 14% | |
| Mueller cell | 4 studies | 27% ± 14% | |
| GABAergic interneuron | 3 studies | 33% ± 10% | |
| retinal bipolar neuron | 3 studies | 19% ± 2% | |
| GABAergic amacrine cell | 3 studies | 28% ± 9% | |
| glycinergic amacrine cell | 3 studies | 40% ± 7% | |
| smooth muscle cell | 3 studies | 19% ± 2% | |
| abnormal cell | 3 studies | 26% ± 11% | |
| basal cell | 3 studies | 31% ± 20% | |
| transit amplifying cell | 3 studies | 38% ± 23% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| brain | 99% | 2267.29 | 2618 / 2642 | 100% | 17.68 | 702 / 705 |
| esophagus | 100% | 1211.56 | 1439 / 1445 | 97% | 11.66 | 177 / 183 |
| thymus | 99% | 1105.23 | 649 / 653 | 91% | 5.99 | 553 / 605 |
| uterus | 100% | 1654.94 | 170 / 170 | 85% | 6.08 | 390 / 459 |
| skin | 100% | 2790.75 | 1809 / 1809 | 85% | 9.40 | 400 / 472 |
| bladder | 100% | 1598.38 | 21 / 21 | 84% | 5.82 | 424 / 504 |
| lung | 100% | 2415.04 | 578 / 578 | 84% | 7.88 | 967 / 1155 |
| intestine | 100% | 1389.16 | 965 / 966 | 82% | 5.35 | 431 / 527 |
| pancreas | 100% | 1371.78 | 327 / 328 | 80% | 4.22 | 142 / 178 |
| prostate | 100% | 1574.02 | 245 / 245 | 79% | 3.56 | 396 / 502 |
| adrenal gland | 99% | 3081.18 | 256 / 258 | 77% | 14.04 | 176 / 230 |
| stomach | 96% | 869.80 | 345 / 359 | 77% | 4.83 | 220 / 286 |
| breast | 100% | 1250.86 | 457 / 459 | 71% | 3.84 | 799 / 1118 |
| ovary | 100% | 4639.28 | 180 / 180 | 70% | 3.06 | 303 / 430 |
| kidney | 87% | 669.63 | 77 / 89 | 65% | 3.42 | 583 / 901 |
| ureter | 0% | 0 | 0 / 0 | 100% | 4.62 | 1 / 1 |
| adipose | 99% | 1461.85 | 1196 / 1204 | 0% | 0 | 0 / 0 |
| blood vessel | 99% | 1200.14 | 1324 / 1335 | 0% | 0 | 0 / 0 |
| heart | 91% | 956.47 | 785 / 861 | 0% | 0 | 0 / 0 |
| tonsil | 0% | 0 | 0 / 0 | 91% | 7.75 | 41 / 45 |
| spleen | 65% | 348.03 | 156 / 241 | 0% | 0 | 0 / 0 |
| liver | 39% | 191.44 | 89 / 226 | 22% | 0.72 | 91 / 406 |
| eye | 0% | 0 | 0 / 0 | 60% | 3.64 | 48 / 80 |
| muscle | 55% | 284.15 | 444 / 803 | 0% | 0 | 0 / 0 |
| peripheral blood | 21% | 257.80 | 193 / 929 | 0% | 0 | 0 / 0 |
| lymph node | 0% | 0 | 0 / 0 | 7% | 0.19 | 2 / 29 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| GO_0015031 | Biological process | protein transport |
| GO_0007605 | Biological process | sensory perception of sound |
| GO_1902953 | Biological process | positive regulation of ER to Golgi vesicle-mediated transport |
| GO_0009880 | Biological process | embryonic pattern specification |
| GO_0009948 | Biological process | anterior/posterior axis specification |
| GO_0006888 | Biological process | endoplasmic reticulum to Golgi vesicle-mediated transport |
| GO_0006505 | Biological process | GPI anchor metabolic process |
| GO_0016255 | Biological process | attachment of GPI anchor to protein |
| GO_0021871 | Biological process | forebrain regionalization |
| GO_0005783 | Cellular component | endoplasmic reticulum |
| GO_0005789 | Cellular component | endoplasmic reticulum membrane |
| GO_0050185 | Molecular function | phosphatidylinositol deacylase activity |
| GO_0016788 | Molecular function | hydrolase activity, acting on ester bonds |
| Gene name | PGAP1 |
| Protein name | GPI inositol-deacylase (EC 3.1.-.-) (Post-GPI attachment to proteins factor 1) (hPGAP1) Post-GPI attachment to proteins inositol deacylase 1 GPI inositol-deacylase (EC 3.1.-.-) |
| Synonyms | UNQ3024/PRO9822 |
| Description | FUNCTION: Involved in inositol deacylation of GPI-anchored proteins. GPI inositol deacylation may important for efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi (By similarity). . FUNCTION: Involved in inositol deacylation of GPI-anchored proteins. GPI inositol deacylation may important for efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi. . |
| Accessions | B4DYY6 ENST00000354764.9 [Q75T13-1] ENST00000422444.1 ENST00000374738.3 F8WD75 ENST00000409188.5 A6NI33 ENST00000423035.5 ENST00000409475.5 [Q75T13-3] H7BZN8 Q75T13 |