I. Expression across cell types
Name | Number of supported studies  | Average coverage | |
|---|---|---|---|
| epithelial cell | 5 studies | 21% ± 5% | |
| endothelial cell | 3 studies | 21% ± 7% | |
| glutamatergic neuron | 3 studies | 32% ± 9% |
Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| epithelial cell | 5 studies | 21% ± 5% | |
| endothelial cell | 3 studies | 21% ± 7% | |
| glutamatergic neuron | 3 studies | 32% ± 9% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| bladder | 100% | 2973.19 | 21 / 21 | 100% | 27.87 | 504 / 504 |
| esophagus | 100% | 2745.25 | 1445 / 1445 | 100% | 36.06 | 183 / 183 |
| pancreas | 100% | 2239.85 | 328 / 328 | 100% | 21.56 | 178 / 178 |
| prostate | 100% | 2920.14 | 245 / 245 | 100% | 24.69 | 502 / 502 |
| stomach | 100% | 2007.73 | 359 / 359 | 100% | 30.75 | 285 / 286 |
| breast | 100% | 2895.92 | 459 / 459 | 100% | 31.45 | 1114 / 1118 |
| intestine | 100% | 2548.21 | 966 / 966 | 100% | 32.03 | 525 / 527 |
| skin | 100% | 4532.91 | 1809 / 1809 | 100% | 39.30 | 470 / 472 |
| uterus | 100% | 3466.19 | 170 / 170 | 100% | 29.71 | 457 / 459 |
| lung | 100% | 2616.15 | 578 / 578 | 99% | 27.78 | 1149 / 1155 |
| thymus | 100% | 2547.22 | 653 / 653 | 99% | 19.89 | 599 / 605 |
| ovary | 100% | 3325.54 | 180 / 180 | 99% | 25.23 | 425 / 430 |
| kidney | 100% | 2116.93 | 89 / 89 | 98% | 17.28 | 881 / 901 |
| liver | 100% | 1717.75 | 226 / 226 | 97% | 15.90 | 393 / 406 |
| brain | 96% | 1362.89 | 2536 / 2642 | 99% | 20.52 | 697 / 705 |
| adrenal gland | 100% | 2539.00 | 258 / 258 | 92% | 14.50 | 211 / 230 |
| adipose | 100% | 2676.91 | 1204 / 1204 | 0% | 0 | 0 / 0 |
| lymph node | 0% | 0 | 0 / 0 | 100% | 42.52 | 29 / 29 |
| muscle | 100% | 3047.60 | 803 / 803 | 0% | 0 | 0 / 0 |
| spleen | 100% | 3283.64 | 241 / 241 | 0% | 0 | 0 / 0 |
| tonsil | 0% | 0 | 0 / 0 | 100% | 30.80 | 45 / 45 |
| ureter | 0% | 0 | 0 / 0 | 100% | 12.27 | 1 / 1 |
| blood vessel | 100% | 2050.22 | 1334 / 1335 | 0% | 0 | 0 / 0 |
| eye | 0% | 0 | 0 / 0 | 99% | 32.92 | 79 / 80 |
| heart | 97% | 1571.51 | 836 / 861 | 0% | 0 | 0 / 0 |
| peripheral blood | 78% | 2509.12 | 721 / 929 | 0% | 0 | 0 / 0 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| GO_0006364 | Biological process | rRNA processing |
| GO_0005730 | Cellular component | nucleolus |
| GO_0005654 | Cellular component | nucleoplasm |
| GO_0005829 | Cellular component | cytosol |
| GO_0032040 | Cellular component | small-subunit processome |
| GO_0005634 | Cellular component | nucleus |
| GO_0051059 | Molecular function | NF-kappaB binding |
| GO_0005515 | Molecular function | protein binding |
| GO_0003723 | Molecular function | RNA binding |
| Gene name | PDCD11 |
| Protein name | Protein RRP5 homolog (NF-kappa-B-binding protein) (NFBP) (Programmed cell death protein 11) Programmed cell death 11 |
| Synonyms | KIAA0185 hCG_24137 |
| Description | FUNCTION: Essential for the generation of mature 18S rRNA, specifically necessary for cleavages at sites A0, 1 and 2 of the 47S precursor. Directly interacts with U3 snoRNA. .; FUNCTION: Involved in the biogenesis of rRNA. . |
| Accessions | A0A3B3IUD7 ENST00000369797.8 ENST00000493610.2 S4R3Q4 Q14690 ENST00000649849.1 |
