Name | Number of supported studies | Average coverage | |
---|---|---|---|
amacrine cell | 7 studies | 40% ± 21% | |
retina horizontal cell | 6 studies | 75% ± 11% | |
retinal ganglion cell | 6 studies | 82% ± 21% | |
retinal cone cell | 6 studies | 59% ± 28% | |
retinal pigment epithelial cell | 5 studies | 57% ± 15% | |
pancreatic A cell | 4 studies | 30% ± 9% | |
type B pancreatic cell | 4 studies | 47% ± 17% | |
kidney loop of Henle epithelial cell | 4 studies | 41% ± 20% | |
endothelial cell | 4 studies | 28% ± 6% | |
retinal bipolar neuron | 4 studies | 53% ± 20% | |
OFF-bipolar cell | 4 studies | 74% ± 19% | |
ON-bipolar cell | 4 studies | 64% ± 26% | |
smooth muscle cell | 4 studies | 21% ± 4% | |
GABAergic neuron | 4 studies | 24% ± 2% | |
neuron | 4 studies | 36% ± 19% | |
pancreatic D cell | 3 studies | 67% ± 22% | |
retinal rod cell | 3 studies | 45% ± 23% | |
GABAergic amacrine cell | 3 studies | 52% ± 2% | |
glycinergic amacrine cell | 3 studies | 36% ± 9% | |
rod bipolar cell | 3 studies | 88% ± 9% | |
glutamatergic neuron | 3 studies | 30% ± 5% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 97% | 8209.33 | 238 / 245 | 96% | 154.90 | 480 / 502 |
thymus | 99% | 5809.68 | 649 / 653 | 82% | 158.05 | 497 / 605 |
brain | 90% | 10592.64 | 2377 / 2642 | 38% | 24.49 | 267 / 705 |
bladder | 90% | 12395.71 | 19 / 21 | 24% | 33.95 | 123 / 504 |
uterus | 80% | 2340.84 | 136 / 170 | 19% | 47.35 | 89 / 459 |
esophagus | 78% | 2093.27 | 1128 / 1445 | 11% | 5.65 | 21 / 183 |
kidney | 61% | 731.46 | 54 / 89 | 25% | 32.54 | 224 / 901 |
adrenal gland | 38% | 426.93 | 99 / 258 | 36% | 111.38 | 82 / 230 |
intestine | 57% | 1505.02 | 549 / 966 | 17% | 8.87 | 89 / 527 |
ovary | 4% | 52.06 | 7 / 180 | 49% | 53.31 | 211 / 430 |
stomach | 6% | 91.50 | 22 / 359 | 21% | 14.03 | 60 / 286 |
blood vessel | 19% | 264.21 | 259 / 1335 | 0% | 0 | 0 / 0 |
lung | 0% | 0.88 | 1 / 578 | 19% | 24.43 | 219 / 1155 |
skin | 16% | 134.84 | 290 / 1809 | 0% | 0 | 0 / 472 |
pancreas | 0% | 2.55 | 1 / 328 | 15% | 10.97 | 27 / 178 |
eye | 0% | 0 | 0 / 0 | 9% | 4.20 | 7 / 80 |
breast | 2% | 17.82 | 7 / 459 | 5% | 3.40 | 61 / 1118 |
tonsil | 0% | 0 | 0 / 0 | 4% | 0.72 | 2 / 45 |
liver | 0% | 0 | 0 / 226 | 4% | 4.60 | 15 / 406 |
adipose | 2% | 21.18 | 28 / 1204 | 0% | 0 | 0 / 0 |
spleen | 0% | 2.91 | 1 / 241 | 0% | 0 | 0 / 0 |
muscle | 0% | 1.39 | 1 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
heart | 0% | 0 | 0 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0045666 | Biological process | positive regulation of neuron differentiation |
GO_0032991 | Cellular component | protein-containing complex |
GO_0005829 | Cellular component | cytosol |
GO_0005737 | Cellular component | cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0005516 | Molecular function | calmodulin binding |
GO_0005509 | Molecular function | calcium ion binding |
GO_0005515 | Molecular function | protein binding |
Gene name | PCP4 |
Protein name | Calmodulin regulator protein PCP4 (Brain-specific polypeptide PEP-19) (Purkinje cell protein 4) Purkinje cell protein 4 |
Synonyms | PEP19 |
Description | FUNCTION: Functions as a modulator of calcium-binding by calmodulin. Thereby, regulates calmodulin activity and the different processes it controls . For instance, may play a role in neuronal differentiation through activation of calmodulin-dependent kinase signaling pathways . . |
Accessions | ENST00000462224.5 ENST00000328619.10 F6SSA2 ENST00000708005.1 P48539 |