PCP2 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
retinal bipolar neuron	5 studies	40% ± 14%	Explore
ON-bipolar cell	4 studies	35% ± 11%	Explore
rod bipolar cell	3 studies	90% ± 6%	Explore

II. Expression across tissues

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
thymus	100%	169.47	650 / 653	90%	3.81	542 / 605
prostate	90%	153.00	221 / 245	85%	3.93	429 / 502
pancreas	99%	84.92	324 / 328	71%	2.00	127 / 178
kidney	100%	174.87	89 / 89	60%	2.11	544 / 901
breast	62%	168.11	284 / 459	85%	10.60	947 / 1118
lung	87%	56.13	503 / 578	54%	1.77	623 / 1155
stomach	72%	59.16	258 / 359	36%	0.81	104 / 286
liver	79%	46.29	179 / 226	28%	0.60	115 / 406
ureter	0%	0	0 / 0	100%	8.41	1 / 1
spleen	100%	84.70	240 / 241	0%	0	0 / 0
skin	72%	83.54	1296 / 1809	28%	0.69	131 / 472
bladder	38%	19.95	8 / 21	60%	2.86	303 / 504
peripheral blood	94%	70.84	874 / 929	0%	0	0 / 0
uterus	15%	10.80	26 / 170	75%	4.85	345 / 459
adrenal gland	72%	35.79	187 / 258	17%	0.59	39 / 230
ovary	3%	0.91	6 / 180	84%	3.94	363 / 430
esophagus	33%	17.51	477 / 1445	52%	1.25	95 / 183
tonsil	0%	0	0 / 0	76%	3.83	34 / 45
intestine	33%	16.38	319 / 966	35%	0.82	187 / 527
lymph node	0%	0	0 / 0	62%	1.71	18 / 29
eye	0%	0	0 / 0	48%	2.71	38 / 80
brain	21%	195.85	567 / 2642	9%	0.15	65 / 705
heart	28%	10.94	241 / 861	0%	0	0 / 0
adipose	8%	2.71	101 / 1204	0%	0	0 / 0
blood vessel	1%	0.43	17 / 1335	0%	0	0 / 0
muscle	0%	0.57	3 / 803	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0