Insufficient scRNA-seq data for expression of PCDHB5 at single-cell level.
Insufficient scRNA-seq data for expression of PCDHB5 at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 99% | 232.91 | 243 / 245 | 87% | 16.06 | 438 / 502 |
adrenal gland | 99% | 186.18 | 256 / 258 | 75% | 11.01 | 172 / 230 |
brain | 100% | 228.33 | 2633 / 2642 | 70% | 17.73 | 497 / 705 |
ovary | 100% | 567.53 | 180 / 180 | 67% | 13.26 | 287 / 430 |
pancreas | 100% | 279.27 | 327 / 328 | 61% | 3.29 | 108 / 178 |
thymus | 100% | 246.39 | 650 / 653 | 60% | 7.08 | 361 / 605 |
kidney | 99% | 169.42 | 88 / 89 | 56% | 7.49 | 503 / 901 |
lung | 100% | 219.85 | 577 / 578 | 48% | 5.38 | 555 / 1155 |
breast | 100% | 212.45 | 457 / 459 | 32% | 2.72 | 357 / 1118 |
bladder | 100% | 185.43 | 21 / 21 | 24% | 2.70 | 119 / 504 |
uterus | 100% | 443.24 | 170 / 170 | 13% | 1.76 | 60 / 459 |
skin | 64% | 52.39 | 1157 / 1809 | 45% | 6.72 | 212 / 472 |
esophagus | 80% | 128.33 | 1153 / 1445 | 29% | 2.66 | 53 / 183 |
blood vessel | 100% | 288.83 | 1333 / 1335 | 0% | 0 | 0 / 0 |
adipose | 99% | 149.21 | 1191 / 1204 | 0% | 0 | 0 / 0 |
heart | 96% | 144.59 | 827 / 861 | 0% | 0 | 0 / 0 |
intestine | 81% | 125.96 | 787 / 966 | 9% | 0.79 | 47 / 527 |
stomach | 73% | 96.70 | 261 / 359 | 16% | 1.39 | 45 / 286 |
spleen | 77% | 58.37 | 186 / 241 | 0% | 0 | 0 / 0 |
muscle | 68% | 51.02 | 548 / 803 | 0% | 0 | 0 / 0 |
liver | 38% | 21.56 | 87 / 226 | 25% | 2.45 | 100 / 406 |
eye | 0% | 0 | 0 / 0 | 38% | 2.76 | 30 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 45 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0007416 | Biological process | synapse assembly |
GO_0007156 | Biological process | homophilic cell adhesion via plasma membrane adhesion molecules |
GO_0007155 | Biological process | cell adhesion |
GO_0007268 | Biological process | chemical synaptic transmission |
GO_0016339 | Biological process | calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules |
GO_0045202 | Cellular component | synapse |
GO_0005886 | Cellular component | plasma membrane |
GO_0016020 | Cellular component | membrane |
GO_0005509 | Molecular function | calcium ion binding |
GO_0005515 | Molecular function | protein binding |
Gene name | PCDHB5 |
Protein name | Protocadherin beta-5 (PCDH-beta-5) Protocadherin beta 5 |
Synonyms | |
Description | FUNCTION: Potential calcium-dependent cell-adhesion protein. May be involved in the establishment and maintenance of specific neuronal connections in the brain. |
Accessions | A0A096LP94 Q9Y5E4 ENST00000623915.1 ENST00000231134.8 ENST00000708353.1 |