Name | Number of supported studies  | Average coverage | |
|---|---|---|---|
| epithelial cell | 4 studies | 27% ± 10% | |
| macrophage | 4 studies | 19% ± 3% | |
| classical monocyte | 3 studies | 20% ± 3% | |
| non-classical monocyte | 3 studies | 20% ± 6% | |
| GABAergic neuron | 3 studies | 20% ± 2% | |
| glutamatergic neuron | 3 studies | 24% ± 3% |
Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| brain | 4 studies | 19% ± 2% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| esophagus | 100% | 2855.93 | 1445 / 1445 | 100% | 83.13 | 183 / 183 |
| skin | 100% | 4104.31 | 1809 / 1809 | 100% | 59.71 | 472 / 472 |
| stomach | 100% | 2217.85 | 359 / 359 | 100% | 66.55 | 286 / 286 |
| intestine | 100% | 3183.97 | 966 / 966 | 100% | 60.50 | 526 / 527 |
| ovary | 100% | 3633.42 | 180 / 180 | 100% | 54.73 | 429 / 430 |
| lung | 100% | 4339.17 | 578 / 578 | 100% | 52.55 | 1150 / 1155 |
| bladder | 100% | 3112.00 | 21 / 21 | 99% | 53.64 | 501 / 504 |
| uterus | 100% | 3695.76 | 170 / 170 | 99% | 53.39 | 455 / 459 |
| thymus | 100% | 3151.71 | 653 / 653 | 99% | 31.84 | 597 / 605 |
| kidney | 100% | 2910.70 | 89 / 89 | 99% | 38.68 | 889 / 901 |
| breast | 100% | 3495.66 | 459 / 459 | 98% | 49.14 | 1100 / 1118 |
| brain | 98% | 1520.14 | 2591 / 2642 | 100% | 40.89 | 704 / 705 |
| pancreas | 98% | 1263.21 | 323 / 328 | 98% | 40.55 | 175 / 178 |
| liver | 100% | 2435.88 | 226 / 226 | 93% | 25.67 | 377 / 406 |
| prostate | 100% | 2554.99 | 245 / 245 | 92% | 23.13 | 464 / 502 |
| adrenal gland | 100% | 3323.55 | 258 / 258 | 90% | 19.09 | 208 / 230 |
| adipose | 100% | 3710.96 | 1204 / 1204 | 0% | 0 | 0 / 0 |
| blood vessel | 100% | 2778.73 | 1335 / 1335 | 0% | 0 | 0 / 0 |
| eye | 0% | 0 | 0 / 0 | 100% | 37.11 | 80 / 80 |
| muscle | 100% | 4554.39 | 803 / 803 | 0% | 0 | 0 / 0 |
| spleen | 100% | 3435.41 | 241 / 241 | 0% | 0 | 0 / 0 |
| tonsil | 0% | 0 | 0 / 0 | 100% | 59.96 | 45 / 45 |
| ureter | 0% | 0 | 0 / 0 | 100% | 19.66 | 1 / 1 |
| peripheral blood | 100% | 5292.87 | 927 / 929 | 0% | 0 | 0 / 0 |
| heart | 98% | 2035.24 | 844 / 861 | 0% | 0 | 0 / 0 |
| lymph node | 0% | 0 | 0 / 0 | 97% | 39.83 | 28 / 29 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| GO_0033962 | Biological process | P-body assembly |
| GO_0000290 | Biological process | deadenylation-dependent decapping of nuclear-transcribed mRNA |
| GO_0000932 | Cellular component | P-body |
| GO_0016607 | Cellular component | nuclear speck |
| GO_0030014 | Cellular component | CCR4-NOT complex |
| GO_0005829 | Cellular component | cytosol |
| GO_0036464 | Cellular component | cytoplasmic ribonucleoprotein granule |
| GO_0016605 | Cellular component | PML body |
| GO_0008266 | Molecular function | poly(U) RNA binding |
| GO_0005515 | Molecular function | protein binding |
| GO_0034046 | Molecular function | poly(G) binding |
| GO_0003723 | Molecular function | RNA binding |
| Gene name | PATL1 |
| Protein name | Protein PAT1 homolog 1 (PAT1-like protein 1) (Protein PAT1 homolog b) (Pat1b) (hPat1b) |
| Synonyms | OK/KNS-cl.5 |
| Description | FUNCTION: RNA-binding protein involved in deadenylation-dependent decapping of mRNAs, leading to the degradation of mRNAs . Acts as a scaffold protein that connects deadenylation and decapping machinery . Required for cytoplasmic mRNA processing body (P-body) assembly . .; FUNCTION: (Microbial infection) In case of infection, required for translation and replication of hepatitis C virus (HCV). . |
| Accessions | ENST00000300146.10 [Q86TB9-1] Q86TB9 |
