Name | Number of supported studies | Average coverage | |
---|---|---|---|
classical monocyte | 7 studies | 29% ± 11% | |
endothelial cell | 6 studies | 22% ± 3% | |
macrophage | 6 studies | 21% ± 7% | |
monocyte | 5 studies | 22% ± 6% | |
non-classical monocyte | 4 studies | 26% ± 7% | |
myeloid cell | 4 studies | 25% ± 6% | |
fibroblast | 4 studies | 22% ± 4% | |
conventional dendritic cell | 3 studies | 28% ± 9% | |
epithelial cell | 3 studies | 37% ± 15% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 10482.18 | 1445 / 1445 | 100% | 41.43 | 183 / 183 |
ovary | 100% | 11483.50 | 180 / 180 | 100% | 40.18 | 430 / 430 |
prostate | 100% | 13360.45 | 245 / 245 | 100% | 59.42 | 502 / 502 |
skin | 100% | 9999.20 | 1809 / 1809 | 100% | 50.78 | 472 / 472 |
stomach | 100% | 9121.47 | 359 / 359 | 100% | 34.87 | 286 / 286 |
uterus | 100% | 12873.79 | 170 / 170 | 100% | 52.80 | 459 / 459 |
thymus | 100% | 17580.68 | 653 / 653 | 100% | 74.29 | 604 / 605 |
intestine | 100% | 11956.52 | 966 / 966 | 100% | 34.42 | 526 / 527 |
lung | 100% | 10468.70 | 578 / 578 | 100% | 40.43 | 1152 / 1155 |
bladder | 100% | 9966.71 | 21 / 21 | 100% | 43.76 | 502 / 504 |
breast | 100% | 10667.86 | 459 / 459 | 100% | 48.84 | 1113 / 1118 |
pancreas | 100% | 6362.40 | 328 / 328 | 99% | 42.68 | 177 / 178 |
liver | 100% | 7427.32 | 226 / 226 | 99% | 26.92 | 403 / 406 |
adrenal gland | 100% | 11373.54 | 258 / 258 | 99% | 35.86 | 227 / 230 |
kidney | 100% | 9659.96 | 89 / 89 | 99% | 35.09 | 888 / 901 |
brain | 94% | 4922.27 | 2478 / 2642 | 100% | 50.27 | 705 / 705 |
adipose | 100% | 11156.76 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 11937.78 | 1335 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 45.94 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 53.81 | 29 / 29 |
spleen | 100% | 17134.09 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 39.84 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 23.99 | 1 / 1 |
muscle | 99% | 5062.82 | 797 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 99% | 9273.62 | 920 / 929 | 0% | 0 | 0 / 0 |
heart | 98% | 5080.98 | 847 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006406 | Biological process | mRNA export from nucleus |
GO_0015031 | Biological process | protein transport |
GO_0016973 | Biological process | poly(A)+ mRNA export from nucleus |
GO_0042405 | Cellular component | nuclear inclusion body |
GO_0016607 | Cellular component | nuclear speck |
GO_0042272 | Cellular component | nuclear RNA export factor complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0000346 | Cellular component | transcription export complex |
GO_0005643 | Cellular component | nuclear pore |
GO_0010494 | Cellular component | cytoplasmic stress granule |
GO_0005737 | Cellular component | cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0005515 | Molecular function | protein binding |
GO_0003729 | Molecular function | mRNA binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | NXF1 |
Protein name | Nuclear RNA export factor 1 Nuclear RNA export factor 1 (Tip-associated protein) (Tip-associating protein) (mRNA export factor TAP) |
Synonyms | TAP |
Description | FUNCTION: Involved in the nuclear export of mRNA species bearing retroviral constitutive transport elements (CTE) and in the export of mRNA from the nucleus to the cytoplasm (TAP/NFX1 pathway) . The NXF1-NXT1 heterodimer is involved in the export of HSP70 mRNA in conjunction with ALYREF/THOC4 and THOC5 components of the TREX complex . ALYREF/THOC4-bound mRNA is thought to be transferred to the NXF1-NXT1 heterodimer for export . Also involved in nuclear export of m6A-containing mRNAs: interaction between SRSF3 and YTHDC1 facilitates m6A-containing mRNA-binding to both SRSF3 and NXF1, promoting mRNA nuclear export . . |
Accessions | E9PLA7 B4E227 ENST00000527902.5 ENST00000530875.5 E9PMV7 H0YDU0 ENST00000294172.7 [Q9UBU9-1] ENST00000533671.1 Q9UBU9 E9PQA4 E9PIN3 ENST00000531474.2 ENST00000531709.6 [Q9UBU9-2] ENST00000531131.1 ENST00000532297.5 [Q9UBU9-1] ENST00000525576.1 |