Name | Number of supported studies | Average coverage | |
---|---|---|---|
B cell | 9 studies | 27% ± 6% | |
naive B cell | 7 studies | 18% ± 2% | |
endothelial cell | 6 studies | 23% ± 7% | |
epithelial cell | 5 studies | 34% ± 15% | |
adipocyte | 4 studies | 19% ± 5% | |
GABAergic neuron | 4 studies | 38% ± 12% | |
glutamatergic neuron | 4 studies | 46% ± 13% | |
astrocyte | 4 studies | 28% ± 5% | |
oligodendrocyte | 4 studies | 24% ± 3% | |
microglial cell | 3 studies | 20% ± 1% | |
lymphocyte | 3 studies | 19% ± 3% | |
hepatocyte | 3 studies | 28% ± 15% | |
transit amplifying cell | 3 studies | 31% ± 18% | |
interneuron | 3 studies | 42% ± 17% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 6 studies | 33% ± 13% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1737.65 | 1445 / 1445 | 100% | 23.47 | 183 / 183 |
intestine | 100% | 1799.94 | 966 / 966 | 100% | 23.53 | 527 / 527 |
ovary | 100% | 1483.08 | 180 / 180 | 100% | 18.25 | 430 / 430 |
stomach | 100% | 1556.22 | 359 / 359 | 100% | 22.87 | 286 / 286 |
breast | 100% | 1878.58 | 459 / 459 | 100% | 20.83 | 1116 / 1118 |
prostate | 100% | 1651.86 | 245 / 245 | 100% | 18.22 | 501 / 502 |
lung | 100% | 1496.16 | 576 / 578 | 100% | 20.40 | 1155 / 1155 |
pancreas | 100% | 1152.02 | 328 / 328 | 99% | 14.25 | 177 / 178 |
bladder | 100% | 1657.24 | 21 / 21 | 99% | 20.22 | 501 / 504 |
thymus | 100% | 2563.28 | 653 / 653 | 99% | 16.95 | 599 / 605 |
uterus | 100% | 1556.52 | 170 / 170 | 99% | 20.54 | 454 / 459 |
liver | 100% | 1727.60 | 226 / 226 | 97% | 12.73 | 395 / 406 |
skin | 100% | 2090.44 | 1809 / 1809 | 97% | 20.07 | 458 / 472 |
brain | 97% | 881.68 | 2550 / 2642 | 100% | 16.14 | 704 / 705 |
kidney | 100% | 1471.08 | 89 / 89 | 95% | 13.46 | 860 / 901 |
adrenal gland | 100% | 1905.26 | 258 / 258 | 91% | 11.24 | 209 / 230 |
adipose | 100% | 1794.05 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 29.75 | 29 / 29 |
muscle | 100% | 3266.46 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 2242.71 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 24.04 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 5.57 | 1 / 1 |
blood vessel | 100% | 1835.21 | 1334 / 1335 | 0% | 0 | 0 / 0 |
heart | 95% | 1147.39 | 816 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 92% | 1754.26 | 858 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 90% | 11.95 | 72 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006913 | Biological process | nucleocytoplasmic transport |
GO_0006406 | Biological process | mRNA export from nucleus |
GO_0006606 | Biological process | protein import into nucleus |
GO_0000056 | Biological process | ribosomal small subunit export from nucleus |
GO_0000055 | Biological process | ribosomal large subunit export from nucleus |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0005643 | Cellular component | nuclear pore |
GO_0005635 | Cellular component | nuclear envelope |
GO_0017056 | Molecular function | structural constituent of nuclear pore |
GO_0005515 | Molecular function | protein binding |
Gene name | NUP88 |
Protein name | Nucleoporin 88 Nuclear pore complex protein Nup88 (88 kDa nucleoporin) (Nucleoporin Nup88) |
Synonyms | |
Description | FUNCTION: Component of nuclear pore complex. . |
Accessions | ENST00000700529.1 ENST00000700538.1 ENST00000700540.1 A0A8V8TPT0 J3KMX1 A0A8V8TRA1 A0A8V8TQZ4 I3L2W3 I3L4K7 ENST00000700532.1 A0A8V8TR00 ENST00000225696.9 A0A8V8TQZ0 A0A8V8TQB7 ENST00000700533.1 ENST00000700542.1 ENST00000572290.1 ENST00000700543.1 ENST00000700535.1 ENST00000700537.1 A0A8V8TPS5 A0A8V8TQC3 A0A8V8TQC7 A0A8V8TQD5 ENST00000700545.1 ENST00000700530.1 A0A8V8TRA5 A0A8V8TRA7 ENST00000700546.1 ENST00000700531.1 ENST00000572019.2 A0A8V8TPS0 Q99567 A0A8V8TQZ7 A0A8V8TQC2 A0A8V8TPT4 ENST00000572809.1 ENST00000576708.5 A0A8V8TQD1 ENST00000700544.1 ENST00000700539.1 ENST00000570937.2 ENST00000700534.1 ENST00000700536.1 ENST00000573584.6 A0A8V8TQB1 ENST00000700541.1 I3L245 A0A8V8TQA5 |