Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 7 studies | 28% ± 8% | |
epithelial cell | 6 studies | 32% ± 12% | |
natural killer cell | 5 studies | 17% ± 1% | |
CD4-positive, alpha-beta T cell | 5 studies | 19% ± 4% | |
classical monocyte | 5 studies | 24% ± 6% | |
endothelial cell | 5 studies | 21% ± 4% | |
basal cell | 4 studies | 25% ± 7% | |
CD4-positive, alpha-beta memory T cell | 3 studies | 19% ± 4% | |
squamous epithelial cell | 3 studies | 37% ± 26% | |
hematopoietic precursor cell | 3 studies | 20% ± 2% | |
non-classical monocyte | 3 studies | 26% ± 8% | |
regulatory T cell | 3 studies | 18% ± 2% | |
GABAergic neuron | 3 studies | 29% ± 3% | |
glutamatergic neuron | 3 studies | 39% ± 3% | |
transit amplifying cell | 3 studies | 26% ± 8% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
bladder | 100% | 2332.00 | 21 / 21 | 100% | 26.71 | 504 / 504 |
esophagus | 100% | 2790.06 | 1444 / 1445 | 100% | 39.38 | 183 / 183 |
lung | 100% | 3194.32 | 578 / 578 | 100% | 29.87 | 1154 / 1155 |
breast | 100% | 2535.82 | 459 / 459 | 100% | 30.89 | 1117 / 1118 |
intestine | 100% | 2508.80 | 966 / 966 | 100% | 25.08 | 526 / 527 |
prostate | 100% | 2800.87 | 245 / 245 | 100% | 24.54 | 501 / 502 |
stomach | 100% | 2771.48 | 359 / 359 | 100% | 28.35 | 285 / 286 |
uterus | 100% | 2227.65 | 170 / 170 | 100% | 32.86 | 457 / 459 |
thymus | 100% | 2973.08 | 653 / 653 | 99% | 18.89 | 599 / 605 |
skin | 100% | 4043.91 | 1809 / 1809 | 99% | 34.31 | 467 / 472 |
pancreas | 100% | 1874.55 | 328 / 328 | 99% | 21.06 | 176 / 178 |
brain | 99% | 1940.31 | 2614 / 2642 | 100% | 20.49 | 703 / 705 |
kidney | 100% | 2072.02 | 89 / 89 | 98% | 18.87 | 886 / 901 |
ovary | 100% | 2546.38 | 180 / 180 | 98% | 16.00 | 421 / 430 |
liver | 100% | 2071.48 | 226 / 226 | 97% | 15.30 | 393 / 406 |
adrenal gland | 100% | 3257.02 | 258 / 258 | 96% | 13.00 | 221 / 230 |
adipose | 100% | 2728.68 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 35.27 | 29 / 29 |
spleen | 100% | 4906.13 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 38.28 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 11.04 | 1 / 1 |
blood vessel | 99% | 1428.95 | 1323 / 1335 | 0% | 0 | 0 / 0 |
peripheral blood | 99% | 4432.75 | 917 / 929 | 0% | 0 | 0 / 0 |
heart | 96% | 1027.31 | 830 / 861 | 0% | 0 | 0 / 0 |
muscle | 96% | 1084.95 | 770 / 803 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 89% | 11.97 | 71 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006913 | Biological process | nucleocytoplasmic transport |
GO_0006606 | Biological process | protein import into nucleus |
GO_0051028 | Biological process | mRNA transport |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005643 | Cellular component | nuclear pore |
GO_0031965 | Cellular component | nuclear membrane |
GO_0005635 | Cellular component | nuclear envelope |
GO_0005515 | Molecular function | protein binding |
Gene name | NUP50 |
Protein name | Nucleoporin 50 Nuclear pore complex protein Nup50 (50 kDa nucleoporin) (Nuclear pore-associated protein 60 kDa-like) (Nucleoporin Nup50) |
Synonyms | NPAP60L PRO1146 |
Description | FUNCTION: Component of the nuclear pore complex that has a direct role in nuclear protein import . Actively displaces NLSs from importin-alpha, and facilitates disassembly of the importin-alpha:beta-cargo complex and importin recycling . Interacts with regulatory proteins of cell cycle progression including CDKN1B (By similarity). This interaction is required for correct intracellular transport and degradation of CDKN1B (By similarity). . |
Accessions | ENST00000445721.5 ENST00000422489.1 ENST00000424634.5 ENST00000419387.5 F2Z3L9 Q9UKX7 ENST00000430547.5 ENST00000434760.5 ENST00000407019.6 [Q9UKX7-2] X6RKQ2 B0QY21 ENST00000396096.6 [Q9UKX7-2] ENST00000417702.5 A0A0G2JIF9 A0A0G2JI20 B1AHA5 ENST00000347635.9 [Q9UKX7-1] |