Name | Number of supported studies | Average coverage | |
---|---|---|---|
oligodendrocyte precursor cell | 10 studies | 34% ± 18% | |
B cell | 5 studies | 18% ± 2% | |
endothelial cell | 5 studies | 19% ± 4% | |
GABAergic neuron | 4 studies | 30% ± 11% | |
epithelial cell | 4 studies | 35% ± 6% | |
glutamatergic neuron | 4 studies | 39% ± 17% | |
microglial cell | 4 studies | 22% ± 4% | |
plasmacytoid dendritic cell | 4 studies | 23% ± 4% | |
ciliated cell | 3 studies | 19% ± 2% | |
astrocyte | 3 studies | 28% ± 7% | |
dendritic cell | 3 studies | 31% ± 5% | |
macrophage | 3 studies | 19% ± 4% | |
basal cell | 3 studies | 29% ± 8% | |
interneuron | 3 studies | 34% ± 17% | |
neuron | 3 studies | 22% ± 4% | |
oligodendrocyte | 3 studies | 18% ± 3% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 5 studies | 31% ± 15% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1039.67 | 1445 / 1445 | 100% | 12.26 | 183 / 183 |
ovary | 100% | 1055.52 | 180 / 180 | 100% | 11.63 | 430 / 430 |
intestine | 100% | 1222.32 | 966 / 966 | 100% | 9.81 | 526 / 527 |
bladder | 100% | 1116.10 | 21 / 21 | 100% | 9.30 | 503 / 504 |
brain | 100% | 1165.03 | 2639 / 2642 | 100% | 14.77 | 704 / 705 |
stomach | 100% | 871.34 | 359 / 359 | 100% | 10.35 | 285 / 286 |
lung | 100% | 918.34 | 576 / 578 | 100% | 11.03 | 1153 / 1155 |
uterus | 100% | 1343.33 | 170 / 170 | 99% | 8.74 | 456 / 459 |
breast | 100% | 1035.41 | 459 / 459 | 99% | 8.59 | 1108 / 1118 |
pancreas | 100% | 603.92 | 327 / 328 | 98% | 7.15 | 175 / 178 |
thymus | 100% | 1269.45 | 653 / 653 | 98% | 7.45 | 592 / 605 |
prostate | 100% | 1453.01 | 245 / 245 | 98% | 9.28 | 491 / 502 |
adrenal gland | 100% | 1337.81 | 258 / 258 | 97% | 7.90 | 224 / 230 |
kidney | 100% | 1154.35 | 89 / 89 | 96% | 7.32 | 862 / 901 |
skin | 100% | 943.89 | 1808 / 1809 | 95% | 9.71 | 448 / 472 |
liver | 100% | 779.62 | 226 / 226 | 89% | 4.92 | 360 / 406 |
adipose | 100% | 956.52 | 1204 / 1204 | 0% | 0 | 0 / 0 |
spleen | 100% | 1843.29 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 2.06 | 1 / 1 |
blood vessel | 100% | 1026.04 | 1334 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 611.56 | 799 / 803 | 0% | 0 | 0 / 0 |
heart | 99% | 830.03 | 854 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 98% | 7.08 | 44 / 45 |
lymph node | 0% | 0 | 0 / 0 | 97% | 9.87 | 28 / 29 |
peripheral blood | 81% | 772.00 | 750 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 65% | 3.41 | 52 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006913 | Biological process | nucleocytoplasmic transport |
GO_0006611 | Biological process | protein export from nucleus |
GO_0051028 | Biological process | mRNA transport |
GO_0005635 | Cellular component | nuclear envelope |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0005643 | Cellular component | nuclear pore |
GO_0031965 | Cellular component | nuclear membrane |
GO_0005634 | Cellular component | nucleus |
GO_0005049 | Molecular function | nuclear export signal receptor activity |
GO_0005515 | Molecular function | protein binding |
GO_0046872 | Molecular function | metal ion binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | NUP42 |
Protein name | Nucleoporin NUP42 (NLP-1) (NUP42 homolog) (Nucleoporin hCG1) (Nucleoporin-42) (Nucleoporin-like protein 2) Nucleoporin NUP42 (Nucleoporin-like protein 2) |
Synonyms | CG1 NUPL2 |
Description | FUNCTION: Required for the export of mRNAs containing poly(A) tails from the nucleus into the cytoplasm. .; FUNCTION: (Microbial infection) In case of infection by HIV-1, it may participate in the docking of viral Vpr at the nuclear envelope. . FUNCTION: Required for the export of mRNAs containing poly(A) tails from the nucleus into the cytoplasm. . FUNCTION: Required for the export of mRNAs containing poly(A) tails from the nucleus into the cytoplasm. . FUNCTION: Required for the export of mRNAs containing poly(A) tails from the nucleus into the cytoplasm. . FUNCTION: Required for the export of mRNAs containing poly(A) tails from the nucleus into the cytoplasm. . |
Accessions | ENST00000258742.10 [O15504-1] ENST00000410002.7 C9JYA1 F8WC66 ENST00000413919.1 O15504 ENST00000437140.5 ENST00000438012.5 [O15504-2] B4DT96 Q3B7J4 |