Name | Number of supported studies | Average coverage | |
---|---|---|---|
oligodendrocyte | 7 studies | 27% ± 6% | |
glutamatergic neuron | 5 studies | 35% ± 23% | |
GABAergic neuron | 3 studies | 43% ± 16% | |
astrocyte | 3 studies | 18% ± 3% | |
oligodendrocyte precursor cell | 3 studies | 20% ± 3% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 5 studies | 31% ± 13% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 5698.36 | 2642 / 2642 | 100% | 21.69 | 704 / 705 |
esophagus | 100% | 1354.99 | 1443 / 1445 | 99% | 16.96 | 182 / 183 |
stomach | 99% | 1531.51 | 357 / 359 | 99% | 12.05 | 283 / 286 |
kidney | 100% | 1377.47 | 89 / 89 | 98% | 12.72 | 885 / 901 |
lung | 99% | 1358.51 | 572 / 578 | 99% | 13.69 | 1144 / 1155 |
intestine | 100% | 1592.31 | 964 / 966 | 98% | 10.74 | 517 / 527 |
thymus | 100% | 1771.27 | 652 / 653 | 97% | 10.96 | 588 / 605 |
prostate | 99% | 1276.24 | 243 / 245 | 97% | 15.57 | 489 / 502 |
pancreas | 99% | 1025.35 | 324 / 328 | 96% | 12.03 | 171 / 178 |
breast | 99% | 874.20 | 453 / 459 | 96% | 10.95 | 1073 / 1118 |
skin | 99% | 1114.71 | 1794 / 1809 | 91% | 12.66 | 431 / 472 |
uterus | 97% | 834.14 | 165 / 170 | 92% | 10.78 | 422 / 459 |
adrenal gland | 99% | 1061.74 | 255 / 258 | 89% | 18.06 | 204 / 230 |
bladder | 95% | 976.24 | 20 / 21 | 88% | 8.39 | 442 / 504 |
liver | 100% | 970.35 | 226 / 226 | 75% | 7.64 | 304 / 406 |
ovary | 55% | 326.59 | 99 / 180 | 51% | 2.97 | 218 / 430 |
spleen | 100% | 1269.56 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 3.73 | 1 / 1 |
blood vessel | 99% | 1187.30 | 1318 / 1335 | 0% | 0 | 0 / 0 |
adipose | 98% | 929.86 | 1182 / 1204 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 98% | 12.15 | 44 / 45 |
lymph node | 0% | 0 | 0 / 0 | 93% | 14.45 | 27 / 29 |
heart | 84% | 620.57 | 723 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 59% | 3.46 | 47 / 80 |
muscle | 58% | 334.26 | 463 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 25% | 1187.08 | 236 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0015693 | Biological process | magnesium ion transport |
GO_1903830 | Biological process | magnesium ion transmembrane transport |
GO_0055085 | Biological process | transmembrane transport |
GO_0005886 | Cellular component | plasma membrane |
GO_0016020 | Cellular component | membrane |
GO_0005769 | Cellular component | early endosome |
GO_0015095 | Molecular function | magnesium ion transmembrane transporter activity |
GO_0005515 | Molecular function | protein binding |
Gene name | NIPA1 |
Protein name | NIPA1 protein Alternative protein NIPA1 NIPA magnesium transporter 1 Magnesium transporter NIPA1 (Non-imprinted in Prader-Willi/Angelman syndrome region protein 1) (Spastic paraplegia 6 protein) |
Synonyms | SPG6 |
Description | FUNCTION: Acts as a Mg(2+) transporter. Can also transport other divalent cations such as Fe(2+), Sr(2+), Ba(2+), Zn(2+) and Co(2+) but to a much less extent than Mg(2+) (By similarity). . |
Accessions | H0YMY7 ENST00000337435.9 [Q7RTP0-1] ENST00000559448.5 Q8TAY1 L0R6L6 ENST00000561183.5 [Q7RTP0-2] Q3SYP4 ENST00000673033.1 [Q7RTP0-1] Q7RTP0 ENST00000557930.1 ENST00000673341.1 [Q7RTP0-1] ENST00000437912.6 [Q7RTP0-2] H0YLP7 |