NHSL2 report

Query

Invalid input gene. Please select from the suggestions.

I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
endothelial cell	14 studies	24% ± 6%	Explore
fibroblast	9 studies	21% ± 4%	Explore
pericyte	6 studies	18% ± 3%	Explore
glutamatergic neuron	5 studies	35% ± 7%	Explore
macrophage	4 studies	25% ± 5%	Explore
classical monocyte	3 studies	18% ± 2%	Explore
granule cell	3 studies	34% ± 13%	Explore
monocyte	3 studies	24% ± 5%	Explore
epithelial cell	3 studies	30% ± 15%	Explore
endothelial cell of vascular tree	3 studies	19% ± 2%	Explore
GABAergic neuron	3 studies	31% ± 9%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	6 studies	25% ± 7%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
thymus	100%	1867.42	650 / 653	96%	11.37	582 / 605
breast	100%	2185.57	458 / 459	95%	5.14	1057 / 1118
prostate	99%	2474.44	243 / 245	81%	2.36	405 / 502
brain	91%	2566.01	2402 / 2642	79%	2.01	558 / 705
lung	100%	2287.16	577 / 578	66%	1.97	761 / 1155
esophagus	87%	2270.17	1257 / 1445	69%	1.99	126 / 183
adrenal gland	60%	478.24	154 / 258	87%	10.09	201 / 230
bladder	100%	2480.14	21 / 21	44%	1.32	221 / 504
kidney	72%	543.01	64 / 89	71%	3.11	641 / 901
uterus	98%	2179.30	167 / 170	40%	1.81	183 / 459
ovary	77%	677.07	139 / 180	58%	1.47	251 / 430
stomach	65%	1036.46	234 / 359	57%	2.38	162 / 286
intestine	85%	2179.41	819 / 966	36%	0.93	191 / 527
skin	80%	850.08	1441 / 1809	36%	0.88	169 / 472
adipose	100%	2898.36	1204 / 1204	0%	0	0 / 0
blood vessel	100%	2432.68	1330 / 1335	0%	0	0 / 0
spleen	98%	1499.29	235 / 241	0%	0	0 / 0
pancreas	12%	75.60	38 / 328	84%	2.67	149 / 178
heart	88%	812.93	758 / 861	0%	0	0 / 0
peripheral blood	80%	4153.29	739 / 929	0%	0	0 / 0
tonsil	0%	0	0 / 0	51%	1.16	23 / 45
liver	2%	13.46	5 / 226	26%	0.47	106 / 406
muscle	19%	129.58	150 / 803	0%	0	0 / 0
lymph node	0%	0	0 / 0	14%	0.19	4 / 29
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
eye	0%	0	0 / 0	0%	0	0 / 80
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1