Name | Number of supported studies | Average coverage | |
---|---|---|---|
epithelial cell | 4 studies | 23% ± 4% | |
astrocyte | 4 studies | 18% ± 3% | |
GABAergic neuron | 3 studies | 18% ± 2% | |
glutamatergic neuron | 3 studies | 26% ± 6% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 3 studies | 21% ± 5% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 2560.65 | 1445 / 1445 | 100% | 23.45 | 183 / 183 |
intestine | 100% | 2742.97 | 966 / 966 | 100% | 19.83 | 527 / 527 |
uterus | 100% | 3790.49 | 170 / 170 | 100% | 19.79 | 459 / 459 |
bladder | 100% | 2962.86 | 21 / 21 | 100% | 20.97 | 503 / 504 |
prostate | 100% | 3176.50 | 245 / 245 | 100% | 22.34 | 501 / 502 |
thymus | 100% | 5188.92 | 653 / 653 | 100% | 23.65 | 603 / 605 |
stomach | 100% | 2065.66 | 359 / 359 | 100% | 20.57 | 285 / 286 |
breast | 100% | 2874.46 | 459 / 459 | 100% | 21.02 | 1114 / 1118 |
skin | 100% | 3540.15 | 1809 / 1809 | 100% | 18.07 | 470 / 472 |
lung | 100% | 2672.04 | 578 / 578 | 99% | 21.67 | 1148 / 1155 |
pancreas | 100% | 1802.92 | 327 / 328 | 99% | 16.63 | 177 / 178 |
ovary | 100% | 3829.94 | 180 / 180 | 99% | 20.36 | 426 / 430 |
kidney | 100% | 2264.08 | 89 / 89 | 98% | 14.74 | 880 / 901 |
brain | 96% | 1581.18 | 2530 / 2642 | 100% | 20.50 | 705 / 705 |
liver | 100% | 1475.00 | 226 / 226 | 96% | 11.47 | 388 / 406 |
adrenal gland | 100% | 2024.75 | 258 / 258 | 90% | 9.49 | 207 / 230 |
adipose | 100% | 2300.50 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 18.45 | 29 / 29 |
muscle | 100% | 2093.64 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 2703.76 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 16.62 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 8.20 | 1 / 1 |
blood vessel | 100% | 2405.57 | 1334 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 99% | 17.82 | 79 / 80 |
peripheral blood | 95% | 1658.70 | 883 / 929 | 0% | 0 | 0 / 0 |
heart | 95% | 1054.72 | 818 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006281 | Biological process | DNA repair |
GO_0045995 | Biological process | regulation of embryonic development |
GO_0045739 | Biological process | positive regulation of DNA repair |
GO_0006282 | Biological process | regulation of DNA repair |
GO_0060382 | Biological process | regulation of DNA strand elongation |
GO_1904507 | Biological process | positive regulation of telomere maintenance in response to DNA damage |
GO_0006338 | Biological process | chromatin remodeling |
GO_0045893 | Biological process | positive regulation of DNA-templated transcription |
GO_0000723 | Biological process | telomere maintenance |
GO_0033044 | Biological process | regulation of chromosome organization |
GO_0006310 | Biological process | DNA recombination |
GO_0006275 | Biological process | regulation of DNA replication |
GO_0051726 | Biological process | regulation of cell cycle |
GO_0005654 | Cellular component | nucleoplasm |
GO_0031011 | Cellular component | Ino80 complex |
GO_0005634 | Cellular component | nucleus |
GO_0003677 | Molecular function | DNA binding |
GO_0002020 | Molecular function | protease binding |
GO_0005515 | Molecular function | protein binding |
Gene name | NFRKB |
Protein name | Nuclear factor related to kappaB binding protein Nuclear factor related to kappa-B-binding protein (DNA-binding protein R kappa-B) (INO80 complex subunit G) |
Synonyms | INO80G |
Description | FUNCTION: Binds to the DNA consensus sequence 5'-GGGGAATCTCC-3'. .; FUNCTION: Putative regulatory component of the chromatin remodeling INO80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair. Modulates the deubiquitinase activity of UCHL5 in the INO80 complex. . |
Accessions | ENST00000524746.5 [Q6P4R8-1] E9PJE1 ENST00000524794.5 [Q6P4R8-2] Q6P4R8 ENST00000532225.5 E9PJU3 E9PM88 E9PQ59 ENST00000682444.1 [Q6P4R8-1] ENST00000446488.7 [Q6P4R8-1] ENST00000531318.1 E9PJG2 ENST00000529319.5 ENST00000530278.5 ENST00000526940.1 ENST00000531755.5 ENST00000526884.1 E9PQB0 |