Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 21 studies | 39% ± 24% | |
astrocyte | 17 studies | 41% ± 21% | |
oligodendrocyte | 13 studies | 49% ± 16% | |
oligodendrocyte precursor cell | 13 studies | 67% ± 18% | |
glutamatergic neuron | 12 studies | 83% ± 16% | |
GABAergic neuron | 10 studies | 69% ± 22% | |
microglial cell | 9 studies | 38% ± 20% | |
neuron | 8 studies | 51% ± 20% | |
retinal cone cell | 7 studies | 67% ± 29% | |
smooth muscle cell | 7 studies | 27% ± 7% | |
endothelial cell | 6 studies | 47% ± 20% | |
interneuron | 6 studies | 64% ± 26% | |
amacrine cell | 6 studies | 49% ± 16% | |
retinal rod cell | 6 studies | 63% ± 32% | |
adipocyte | 6 studies | 25% ± 8% | |
myofibroblast cell | 5 studies | 24% ± 13% | |
ciliated cell | 5 studies | 33% ± 15% | |
granule cell | 4 studies | 70% ± 27% | |
retinal bipolar neuron | 4 studies | 37% ± 12% | |
retinal ganglion cell | 4 studies | 46% ± 23% | |
GABAergic interneuron | 3 studies | 72% ± 12% | |
GABAergic amacrine cell | 3 studies | 86% ± 7% | |
OFF-bipolar cell | 3 studies | 55% ± 29% | |
ON-bipolar cell | 3 studies | 67% ± 34% | |
glycinergic amacrine cell | 3 studies | 45% ± 22% | |
retina horizontal cell | 3 studies | 34% ± 17% | |
ependymal cell | 3 studies | 54% ± 12% | |
adventitial cell | 3 studies | 39% ± 18% | |
pericyte | 3 studies | 16% ± 1% | |
Schwann cell | 3 studies | 65% ± 22% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 97% | 4306.69 | 2560 / 2642 | 91% | 9.73 | 639 / 705 |
breast | 94% | 1791.76 | 431 / 459 | 79% | 4.23 | 885 / 1118 |
prostate | 77% | 1333.92 | 189 / 245 | 72% | 1.95 | 361 / 502 |
lung | 89% | 1634.07 | 513 / 578 | 36% | 1.24 | 412 / 1155 |
skin | 82% | 2160.51 | 1484 / 1809 | 42% | 3.60 | 196 / 472 |
intestine | 88% | 3517.54 | 848 / 966 | 35% | 1.04 | 182 / 527 |
bladder | 90% | 3908.00 | 19 / 21 | 30% | 0.93 | 151 / 504 |
stomach | 65% | 1815.65 | 233 / 359 | 50% | 1.77 | 143 / 286 |
esophagus | 71% | 2936.23 | 1025 / 1445 | 42% | 1.42 | 77 / 183 |
thymus | 78% | 1073.90 | 512 / 653 | 33% | 1.08 | 198 / 605 |
uterus | 87% | 1875.94 | 148 / 170 | 21% | 0.90 | 98 / 459 |
pancreas | 18% | 169.26 | 58 / 328 | 85% | 3.94 | 152 / 178 |
adipose | 100% | 4743.31 | 1201 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 99% | 3503.82 | 1328 / 1335 | 0% | 0 | 0 / 0 |
kidney | 46% | 680.46 | 41 / 89 | 40% | 2.55 | 358 / 901 |
heart | 82% | 1613.56 | 702 / 861 | 0% | 0 | 0 / 0 |
adrenal gland | 15% | 140.98 | 39 / 258 | 62% | 4.55 | 143 / 230 |
ovary | 58% | 915.72 | 105 / 180 | 14% | 0.32 | 60 / 430 |
muscle | 32% | 335.71 | 255 / 803 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 16% | 0.47 | 7 / 45 |
liver | 0% | 0 | 0 / 226 | 3% | 0.05 | 12 / 406 |
eye | 0% | 0 | 0 / 0 | 3% | 0.10 | 2 / 80 |
spleen | 0% | 2.82 | 1 / 241 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0007631 | Biological process | feeding behavior |
GO_0098609 | Biological process | cell-cell adhesion |
GO_0051963 | Biological process | regulation of synapse assembly |
GO_0010976 | Biological process | positive regulation of neuron projection development |
GO_0007626 | Biological process | locomotory behavior |
GO_0031175 | Biological process | neuron projection development |
GO_0098552 | Cellular component | side of membrane |
GO_0005576 | Cellular component | extracellular region |
GO_0030425 | Cellular component | dendrite |
GO_0005886 | Cellular component | plasma membrane |
GO_0043025 | Cellular component | neuronal cell body |
GO_0005515 | Molecular function | protein binding |
Gene name | NEGR1 |
Protein name | Neuronal growth regulator 1 (IgLON family member 4) Alternative protein NEGR1 |
Synonyms | UNQ2433/PRO4993 IGLON4 |
Description | FUNCTION: May be involved in cell-adhesion. May function as a trans-neural growth-promoting factor in regenerative axon sprouting in the mammalian brain (By similarity). . |
Accessions | ENST00000306821.3 [Q7Z3B1-2] Q7Z3B1 L8E9Q9 ENST00000357731.10 [Q7Z3B1-1] |