Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 11 studies | 27% ± 13% | |
type I pneumocyte | 10 studies | 38% ± 15% | |
ciliated cell | 10 studies | 28% ± 9% | |
epithelial cell | 8 studies | 30% ± 15% | |
respiratory goblet cell | 6 studies | 36% ± 12% | |
endothelial cell of lymphatic vessel | 6 studies | 32% ± 12% | |
type II pneumocyte | 6 studies | 36% ± 9% | |
basal cell | 5 studies | 19% ± 3% | |
goblet cell | 5 studies | 42% ± 26% | |
club cell | 5 studies | 33% ± 8% | |
glutamatergic neuron | 4 studies | 33% ± 19% | |
secretory cell | 3 studies | 23% ± 9% | |
endothelial cell of vascular tree | 3 studies | 41% ± 21% | |
transit amplifying cell | 3 studies | 31% ± 12% | |
mucus secreting cell | 3 studies | 36% ± 6% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
lung | 4 studies | 21% ± 3% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 98% | 2751.43 | 240 / 245 | 100% | 25.53 | 500 / 502 |
breast | 100% | 4636.52 | 459 / 459 | 96% | 25.94 | 1074 / 1118 |
thymus | 100% | 5743.02 | 653 / 653 | 94% | 21.63 | 567 / 605 |
pancreas | 100% | 4527.04 | 328 / 328 | 93% | 17.13 | 166 / 178 |
stomach | 94% | 2403.14 | 336 / 359 | 97% | 17.02 | 277 / 286 |
lung | 98% | 3250.40 | 567 / 578 | 86% | 15.33 | 995 / 1155 |
intestine | 80% | 1839.74 | 768 / 966 | 97% | 17.43 | 513 / 527 |
uterus | 100% | 1901.49 | 170 / 170 | 71% | 11.43 | 328 / 459 |
esophagus | 91% | 1383.66 | 1322 / 1445 | 78% | 16.98 | 142 / 183 |
kidney | 100% | 1536.71 | 89 / 89 | 60% | 4.68 | 544 / 901 |
bladder | 90% | 1353.52 | 19 / 21 | 70% | 8.64 | 351 / 504 |
ovary | 47% | 442.94 | 85 / 180 | 89% | 10.45 | 381 / 430 |
ureter | 0% | 0 | 0 / 0 | 100% | 4.46 | 1 / 1 |
adipose | 100% | 3526.70 | 1202 / 1204 | 0% | 0 | 0 / 0 |
liver | 52% | 359.02 | 117 / 226 | 43% | 4.03 | 175 / 406 |
spleen | 91% | 962.85 | 219 / 241 | 0% | 0 | 0 / 0 |
skin | 69% | 1152.59 | 1246 / 1809 | 14% | 1.06 | 65 / 472 |
brain | 57% | 1280.12 | 1506 / 2642 | 22% | 2.28 | 153 / 705 |
tonsil | 0% | 0 | 0 / 0 | 67% | 7.69 | 30 / 45 |
adrenal gland | 52% | 357.52 | 135 / 258 | 4% | 0.25 | 9 / 230 |
muscle | 39% | 290.93 | 314 / 803 | 0% | 0 | 0 / 0 |
blood vessel | 36% | 418.98 | 482 / 1335 | 0% | 0 | 0 / 0 |
heart | 27% | 209.14 | 229 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 21% | 1.48 | 17 / 80 |
lymph node | 0% | 0 | 0 / 0 | 14% | 0.68 | 4 / 29 |
peripheral blood | 1% | 5.50 | 9 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0030050 | Biological process | vesicle transport along actin filament |
GO_0007015 | Biological process | actin filament organization |
GO_0015629 | Cellular component | actin cytoskeleton |
GO_0070062 | Cellular component | extracellular exosome |
GO_0031982 | Cellular component | vesicle |
GO_0016020 | Cellular component | membrane |
GO_0016459 | Cellular component | myosin complex |
GO_0005737 | Cellular component | cytoplasm |
GO_0000146 | Molecular function | microfilament motor activity |
GO_0005516 | Molecular function | calmodulin binding |
GO_0051015 | Molecular function | actin filament binding |
GO_0005524 | Molecular function | ATP binding |
Gene name | MYO5C |
Protein name | Myosin VC Unconventional myosin-Vc |
Synonyms | |
Description | FUNCTION: May be involved in transferrin trafficking. Likely to power actin-based membrane trafficking in many physiologically crucial tissues. |
Accessions | ENST00000559459.5 [Q9NQX4-2] ENST00000558479.1 ENST00000558902.5 H0YMK3 ENST00000261839.12 [Q9NQX4-1] H0YM93 ENST00000560809.5 Q9NQX4 H0YM96 |