Name | Number of supported studies | Average coverage | |
---|---|---|---|
epithelial cell | 4 studies | 25% ± 5% | |
GABAergic neuron | 3 studies | 26% ± 4% | |
glutamatergic neuron | 3 studies | 32% ± 2% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 22% ± 5% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1111.98 | 1445 / 1445 | 100% | 10.31 | 183 / 183 |
lung | 100% | 1236.90 | 578 / 578 | 100% | 9.80 | 1155 / 1155 |
ovary | 100% | 1362.42 | 180 / 180 | 100% | 9.19 | 430 / 430 |
breast | 100% | 1431.05 | 459 / 459 | 100% | 11.93 | 1116 / 1118 |
brain | 100% | 834.30 | 2634 / 2642 | 100% | 8.76 | 705 / 705 |
bladder | 100% | 1249.43 | 21 / 21 | 100% | 9.97 | 502 / 504 |
prostate | 100% | 1209.89 | 245 / 245 | 99% | 8.53 | 499 / 502 |
uterus | 100% | 1353.34 | 170 / 170 | 99% | 10.61 | 456 / 459 |
intestine | 100% | 1291.42 | 966 / 966 | 99% | 10.29 | 522 / 527 |
thymus | 100% | 1339.69 | 653 / 653 | 99% | 8.01 | 599 / 605 |
stomach | 100% | 902.96 | 359 / 359 | 99% | 10.03 | 283 / 286 |
pancreas | 100% | 737.19 | 328 / 328 | 99% | 7.36 | 176 / 178 |
kidney | 100% | 862.74 | 89 / 89 | 98% | 6.64 | 880 / 901 |
skin | 100% | 1609.16 | 1809 / 1809 | 97% | 9.10 | 460 / 472 |
adrenal gland | 100% | 1328.68 | 258 / 258 | 97% | 6.37 | 223 / 230 |
liver | 100% | 863.56 | 226 / 226 | 95% | 5.48 | 385 / 406 |
adipose | 100% | 1366.31 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 8.63 | 29 / 29 |
muscle | 100% | 1440.89 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 1325.88 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 10.03 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 3.35 | 1 / 1 |
blood vessel | 100% | 876.33 | 1334 / 1335 | 0% | 0 | 0 / 0 |
heart | 98% | 851.84 | 845 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 94% | 7.27 | 75 / 80 |
peripheral blood | 67% | 616.12 | 622 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0000965 | Biological process | mitochondrial RNA 3'-end processing |
GO_0071044 | Biological process | histone mRNA catabolic process |
GO_0006397 | Biological process | mRNA processing |
GO_0031123 | Biological process | RNA 3'-end processing |
GO_0043231 | Cellular component | intracellular membrane-bounded organelle |
GO_0005739 | Cellular component | mitochondrion |
GO_0005654 | Cellular component | nucleoplasm |
GO_0030145 | Molecular function | manganese ion binding |
GO_0042803 | Molecular function | protein homodimerization activity |
GO_1990817 | Molecular function | poly(A) RNA polymerase activity |
GO_0002134 | Molecular function | UTP binding |
GO_0005524 | Molecular function | ATP binding |
GO_0042802 | Molecular function | identical protein binding |
GO_0005515 | Molecular function | protein binding |
GO_0000287 | Molecular function | magnesium ion binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | MTPAP |
Protein name | Mitochondrial poly(A) polymerase Poly(A) RNA polymerase, mitochondrial (PAP) (EC 2.7.7.19) (PAP-associated domain-containing protein 1) (Polynucleotide adenylyltransferase) (Terminal uridylyltransferase 1) (TUTase 1) (mtPAP) |
Synonyms | PAPD1 |
Description | FUNCTION: Polymerase that creates the 3' poly(A) tail of mitochondrial transcripts. Can use all four nucleotides, but has higher activity with ATP and UTP (in vitro). Plays a role in replication-dependent histone mRNA degradation. May be involved in the terminal uridylation of mature histone mRNAs before their degradation is initiated. Might be responsible for the creation of some UAA stop codons which are not encoded in mtDNA. . |
Accessions | ENST00000263063.9 [Q9NVV4-1] ENST00000421701.1 Q5T852 Q9NVV4 Q5T851 ENST00000417581.1 |