MSH4 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
GABAergic neuron	3 studies	30% ± 4%	Explore
glutamatergic neuron	3 studies	34% ± 2%	Explore

II. Expression across tissues

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
ovary	98%	85.04	177 / 180	6%	0.12	26 / 430
muscle	98%	93.92	788 / 803	0%	0	0 / 0
uterus	96%	80.92	164 / 170	2%	0.03	7 / 459
lung	93%	55.37	536 / 578	4%	0.07	50 / 1155
intestine	91%	54.06	879 / 966	6%	0.17	31 / 527
spleen	97%	58.80	233 / 241	0%	0	0 / 0
bladder	90%	84.76	19 / 21	4%	0.10	19 / 504
blood vessel	94%	59.13	1256 / 1335	0%	0	0 / 0
prostate	91%	51.11	224 / 245	1%	0.02	7 / 502
breast	88%	47.24	402 / 459	4%	0.07	43 / 1118
brain	83%	59.30	2181 / 2642	3%	0.06	22 / 705
adipose	84%	39.69	1014 / 1204	0%	0	0 / 0
heart	82%	38.06	710 / 861	0%	0	0 / 0
esophagus	74%	39.67	1071 / 1445	4%	0.16	7 / 183
thymus	76%	27.82	494 / 653	1%	0.01	6 / 605
stomach	65%	25.06	233 / 359	6%	0.12	16 / 286
adrenal gland	61%	18.52	158 / 258	8%	0.13	18 / 230
kidney	62%	21.89	55 / 89	6%	0.14	54 / 901
skin	50%	16.31	904 / 1809	4%	0.10	19 / 472
pancreas	38%	10.59	125 / 328	3%	0.05	5 / 178
liver	22%	6.86	50 / 226	4%	0.05	15 / 406
peripheral blood	17%	4.54	158 / 929	0%	0	0 / 0
eye	0%	0	0 / 0	4%	0.11	3 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
tonsil	0%	0	0 / 0	0%	0	0 / 45
ureter	0%	0	0 / 0	0%	0	0 / 1