Name | Number of supported studies | Average coverage | |
---|---|---|---|
adipocyte | 6 studies | 25% ± 8% | |
retinal cone cell | 5 studies | 31% ± 12% | |
retinal rod cell | 5 studies | 20% ± 2% | |
hepatocyte | 3 studies | 32% ± 18% | |
GABAergic neuron | 3 studies | 33% ± 3% | |
glutamatergic neuron | 3 studies | 36% ± 1% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 95% | 959.02 | 434 / 459 | 99% | 47.81 | 1112 / 1118 |
thymus | 97% | 321.88 | 632 / 653 | 94% | 14.01 | 570 / 605 |
lung | 95% | 516.81 | 547 / 578 | 96% | 25.83 | 1106 / 1155 |
skin | 88% | 1288.04 | 1590 / 1809 | 99% | 56.24 | 466 / 472 |
brain | 91% | 811.54 | 2408 / 2642 | 94% | 17.55 | 660 / 705 |
adrenal gland | 93% | 501.28 | 239 / 258 | 85% | 18.81 | 196 / 230 |
kidney | 97% | 372.44 | 86 / 89 | 58% | 6.97 | 526 / 901 |
liver | 89% | 697.34 | 202 / 226 | 56% | 5.51 | 228 / 406 |
esophagus | 41% | 1095.87 | 593 / 1445 | 95% | 17.39 | 173 / 183 |
intestine | 45% | 176.73 | 439 / 966 | 84% | 9.46 | 445 / 527 |
bladder | 33% | 111.52 | 7 / 21 | 94% | 16.77 | 472 / 504 |
ovary | 23% | 48.64 | 41 / 180 | 96% | 15.46 | 411 / 430 |
pancreas | 25% | 63.15 | 82 / 328 | 90% | 10.11 | 161 / 178 |
uterus | 17% | 58.82 | 29 / 170 | 93% | 24.50 | 426 / 459 |
stomach | 31% | 82.72 | 111 / 359 | 75% | 7.45 | 215 / 286 |
tonsil | 0% | 0 | 0 / 0 | 100% | 32.17 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 8.49 | 1 / 1 |
eye | 0% | 0 | 0 / 0 | 98% | 28.51 | 78 / 80 |
lymph node | 0% | 0 | 0 / 0 | 97% | 34.78 | 28 / 29 |
spleen | 95% | 316.55 | 229 / 241 | 0% | 0 | 0 / 0 |
adipose | 82% | 379.63 | 993 / 1204 | 0% | 0 | 0 / 0 |
prostate | 60% | 164.81 | 147 / 245 | 12% | 0.87 | 62 / 502 |
peripheral blood | 41% | 666.60 | 377 / 929 | 0% | 0 | 0 / 0 |
blood vessel | 6% | 18.73 | 86 / 1335 | 0% | 0 | 0 / 0 |
heart | 1% | 1.59 | 6 / 861 | 0% | 0 | 0 / 0 |
muscle | 0% | 1.38 | 4 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0030318 | Biological process | melanocyte differentiation |
GO_0032400 | Biological process | melanosome localization |
GO_0090382 | Biological process | phagosome maturation |
GO_0032402 | Biological process | melanosome transport |
GO_0072385 | Biological process | minus-end-directed organelle transport along microtubule |
GO_0042470 | Cellular component | melanosome |
GO_0016324 | Cellular component | apical plasma membrane |
GO_0033162 | Cellular component | melanosome membrane |
GO_0032991 | Cellular component | protein-containing complex |
GO_0031090 | Cellular component | organelle membrane |
GO_0031902 | Cellular component | late endosome membrane |
GO_0005765 | Cellular component | lysosomal membrane |
GO_0030659 | Cellular component | cytoplasmic vesicle membrane |
GO_0005515 | Molecular function | protein binding |
GO_0035091 | Molecular function | phosphatidylinositol binding |
Gene name | MREG |
Protein name | Melanoregulin (Dilute suppressor protein homolog) Melanoregulin |
Synonyms | DSU HDCGA21P |
Description | FUNCTION: Probably functions as a cargo-recognition protein that couples cytoplasmic vesicles to the transport machinery. Plays a role in hair pigmentation, a process that involves shedding of melanosome-containing vesicles from melanocytes, followed by phagocytosis of the melanosome-containing vesicles by keratinocytes. Functions on melanosomes as receptor for RILP and the complex formed by RILP and DCTN1, and thereby contributes to retrograde melanosome transport from the cell periphery to the center. Overexpression causes accumulation of late endosomes and/or lysosomes at the microtubule organising center (MTOC) at the center of the cell. Probably binds cholesterol and requires the presence of cholesterol in membranes to function in microtubule-mediated retrograde organelle transport. Binds phosphatidylinositol 3-phosphate, phosphatidylinositol 4-phosphate, phosphatidylinositol 5-phosphate and phosphatidylinositol 3,5-bisphosphate, but not phosphatidylinositol 3,4-bisphosphate or phosphatidylinositol 4,5-bisphosphate (By similarity). Required for normal phagosome clearing and normal activation of lysosomal enzymes in lysosomes from retinal pigment epithelium cells . Required for normal degradation of the lipofuscin component N-retinylidene-N-retinylethanolamine (A2E) in the eye. May function in membrane fusion and regulate the biogenesis of disk membranes of photoreceptor rod cells (By similarity). . |
Accessions | C9JFU1 C9JAG4 ENST00000439791.5 ENST00000424992.5 Q8N565 ENST00000420348.1 C9JYV9 ENST00000263268.11 [Q8N565-1] |