Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 7 studies | 25% ± 9% | |
oligodendrocyte | 6 studies | 24% ± 7% | |
epithelial cell | 5 studies | 23% ± 10% | |
astrocyte | 5 studies | 26% ± 7% | |
GABAergic neuron | 4 studies | 37% ± 13% | |
glutamatergic neuron | 4 studies | 48% ± 17% | |
microglial cell | 3 studies | 20% ± 1% | |
oligodendrocyte precursor cell | 3 studies | 27% ± 6% | |
dendritic cell | 3 studies | 16% ± 1% | |
type I pneumocyte | 3 studies | 24% ± 4% | |
fibroblast | 3 studies | 20% ± 4% | |
transit amplifying cell | 3 studies | 31% ± 16% | |
interneuron | 3 studies | 39% ± 22% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 4910.80 | 459 / 459 | 100% | 41.69 | 1118 / 1118 |
esophagus | 100% | 4142.01 | 1445 / 1445 | 100% | 40.83 | 183 / 183 |
intestine | 100% | 4359.27 | 966 / 966 | 100% | 36.61 | 527 / 527 |
lung | 100% | 4900.58 | 578 / 578 | 100% | 38.79 | 1155 / 1155 |
ovary | 100% | 5156.66 | 180 / 180 | 100% | 43.65 | 430 / 430 |
prostate | 100% | 4441.80 | 245 / 245 | 100% | 34.40 | 502 / 502 |
stomach | 100% | 3163.45 | 359 / 359 | 100% | 33.44 | 286 / 286 |
uterus | 100% | 5614.31 | 170 / 170 | 100% | 37.48 | 459 / 459 |
thymus | 100% | 4741.12 | 653 / 653 | 100% | 39.71 | 604 / 605 |
bladder | 100% | 4311.71 | 21 / 21 | 100% | 37.54 | 503 / 504 |
skin | 100% | 6732.21 | 1809 / 1809 | 100% | 54.25 | 471 / 472 |
pancreas | 100% | 2387.30 | 327 / 328 | 100% | 34.79 | 178 / 178 |
kidney | 100% | 3770.10 | 89 / 89 | 100% | 30.60 | 898 / 901 |
brain | 99% | 3890.36 | 2613 / 2642 | 100% | 38.88 | 705 / 705 |
adrenal gland | 100% | 3384.28 | 258 / 258 | 98% | 37.33 | 226 / 230 |
liver | 100% | 1812.96 | 225 / 226 | 98% | 19.83 | 396 / 406 |
adipose | 100% | 4385.74 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 69.78 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 43.32 | 29 / 29 |
muscle | 100% | 3270.45 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 5627.54 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 31.44 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 17.73 | 1 / 1 |
blood vessel | 100% | 3591.05 | 1334 / 1335 | 0% | 0 | 0 / 0 |
heart | 99% | 2829.87 | 849 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 96% | 3132.31 | 889 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006281 | Biological process | DNA repair |
GO_0007059 | Biological process | chromosome segregation |
GO_0045893 | Biological process | positive regulation of DNA-templated transcription |
GO_0097428 | Biological process | protein maturation by iron-sulfur cluster transfer |
GO_0016020 | Cellular component | membrane |
GO_0005675 | Cellular component | transcription factor TFIIH holo complex |
GO_0005813 | Cellular component | centrosome |
GO_0097361 | Cellular component | cytosolic [4Fe-4S] assembly targeting complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0071817 | Cellular component | MMXD complex |
GO_0005829 | Cellular component | cytosol |
GO_0005737 | Cellular component | cytoplasm |
GO_0005819 | Cellular component | spindle |
GO_0005634 | Cellular component | nucleus |
GO_0019899 | Molecular function | enzyme binding |
GO_0030331 | Molecular function | nuclear estrogen receptor binding |
GO_0030674 | Molecular function | protein-macromolecule adaptor activity |
GO_0030159 | Molecular function | signaling receptor complex adaptor activity |
GO_0003713 | Molecular function | transcription coactivator activity |
GO_0005515 | Molecular function | protein binding |
Gene name | MMS19 |
Protein name | MMS19 nucleotide excision repair protein MMS19 nucleotide excision repair protein homolog (hMMS19) (MET18 homolog) (MMS19-like protein) |
Synonyms | MMS19L |
Description | FUNCTION: Key component of the cytosolic iron-sulfur protein assembly (CIA) complex, a multiprotein complex that mediates the incorporation of iron-sulfur cluster into apoproteins specifically involved in DNA metabolism and genomic integrity . In the CIA complex, MMS19 acts as an adapter between early-acting CIA components and a subset of cellular target iron-sulfur proteins such as ERCC2/XPD, FANCJ and RTEL1, thereby playing a key role in nucleotide excision repair (NER), homologous recombination-mediated double-strand break DNA repair, DNA replication and RNA polymerase II (POL II) transcription . As part of the mitotic spindle-associated MMXD complex, plays a role in chromosome segregation, probably by facilitating iron-sulfur (Fe-S) cluster assembly into ERCC2/XPD . Together with CIAO2, facilitates the transfer of Fe-S clusters to the motor protein KIF4A, which ensures proper localization of KIF4A to mitotic machinery components to promote the progression of mitosis . Indirectly acts as a transcriptional coactivator of estrogen receptor (ER), via its role in iron-sulfur insertion into some component of the TFIIH-machinery . . FUNCTION: Key component of the cytosolic iron-sulfur protein assembly (CIA) complex, a multiprotein complex that mediates the incorporation of iron-sulfur cluster into apoproteins specifically involved in DNA metabolism and genomic integrity. In the CIA complex, MMS19 acts as an adapter between early-acting CIA components and a subset of cellular target iron-sulfur proteins. . FUNCTION: Key component of the cytosolic iron-sulfur protein assembly (CIA) complex, a multiprotein complex that mediates the incorporation of iron-sulfur cluster into apoproteins specifically involved in DNA metabolism and genomic integrity. In the CIA complex, MMS19 acts as an adapter between early-acting CIA components and a subset of cellular target iron-sulfur proteins. . FUNCTION: Key component of the cytosolic iron-sulfur protein assembly (CIA) complex, a multiprotein complex that mediates the incorporation of iron-sulfur cluster into apoproteins specifically involved in DNA metabolism and genomic integrity. In the CIA complex, MMS19 acts as an adapter between early-acting CIA components and a subset of cellular target iron-sulfur proteins. . FUNCTION: Key component of the cytosolic iron-sulfur protein assembly (CIA) complex, a multiprotein complex that mediates the incorporation of iron-sulfur cluster into apoproteins specifically involved in DNA metabolism and genomic integrity. In the CIA complex, MMS19 acts as an adapter between early-acting CIA components and a subset of cellular target iron-sulfur proteins. . FUNCTION: Key component of the cytosolic iron-sulfur protein assembly (CIA) complex, a multiprotein complex that mediates the incorporation of iron-sulfur cluster into apoproteins specifically involved in DNA metabolism and genomic integrity. In the CIA complex, MMS19 acts as an adapter between early-acting CIA components and a subset of cellular target iron-sulfur proteins. . FUNCTION: Key component of the cytosolic iron-sulfur protein assembly (CIA) complex, a multiprotein complex that mediates the incorporation of iron-sulfur cluster into apoproteins specifically involved in DNA metabolism and genomic integrity. In the CIA complex, MMS19 acts as an adapter between early-acting CIA components and a subset of cellular target iron-sulfur proteins. . FUNCTION: Key component of the cytosolic iron-sulfur protein assembly (CIA) complex, a multiprotein complex that mediates the incorporation of iron-sulfur cluster into apoproteins specifically involved in DNA metabolism and genomic integrity. In the CIA complex, MMS19 acts as an adapter between early-acting CIA components and a subset of cellular target iron-sulfur proteins. . |
Accessions | Q5T454 ENST00000434538.5 ENST00000448660.5 ENST00000437002.5 ENST00000355839.10 [Q96T76-9] ENST00000441194.5 [Q96T76-6] ENST00000434392.5 F8WCH8 ENST00000439048.1 ENST00000327238.14 [Q96T76-5] H0Y746 ENST00000444411.5 ENST00000370782.6 [Q96T76-1] ENST00000438925.7 [Q96T76-1] ENST00000415383.5 [Q96T76-6] H7C0A9 B0QZ77 H0Y7V3 Q96T76 ENST00000422685.5 H7C1W5 |