Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 6 studies | 21% ± 5% | |
non-classical monocyte | 4 studies | 24% ± 4% | |
classical monocyte | 4 studies | 19% ± 4% | |
epithelial cell | 4 studies | 37% ± 16% | |
fibroblast | 4 studies | 25% ± 6% | |
ciliated cell | 4 studies | 29% ± 8% | |
macrophage | 4 studies | 21% ± 4% | |
conventional dendritic cell | 3 studies | 27% ± 6% | |
myeloid cell | 3 studies | 26% ± 5% | |
dendritic cell | 3 studies | 26% ± 7% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
bladder | 100% | 3255.33 | 21 / 21 | 100% | 53.49 | 504 / 504 |
brain | 100% | 6470.47 | 2642 / 2642 | 100% | 124.12 | 705 / 705 |
kidney | 100% | 3284.80 | 89 / 89 | 100% | 74.91 | 901 / 901 |
liver | 100% | 2040.50 | 226 / 226 | 100% | 47.28 | 406 / 406 |
ovary | 100% | 4470.09 | 180 / 180 | 100% | 76.55 | 430 / 430 |
prostate | 100% | 3688.82 | 245 / 245 | 100% | 84.13 | 502 / 502 |
stomach | 100% | 2526.98 | 359 / 359 | 100% | 47.75 | 286 / 286 |
thymus | 100% | 4292.68 | 653 / 653 | 100% | 104.99 | 605 / 605 |
uterus | 100% | 3675.79 | 170 / 170 | 100% | 65.91 | 459 / 459 |
skin | 100% | 2981.33 | 1808 / 1809 | 100% | 61.12 | 472 / 472 |
esophagus | 100% | 2975.32 | 1444 / 1445 | 100% | 46.64 | 183 / 183 |
intestine | 100% | 3142.64 | 966 / 966 | 100% | 48.19 | 526 / 527 |
breast | 100% | 3127.90 | 459 / 459 | 100% | 82.92 | 1115 / 1118 |
adrenal gland | 100% | 4595.72 | 258 / 258 | 100% | 81.96 | 229 / 230 |
pancreas | 99% | 1786.64 | 326 / 328 | 100% | 64.46 | 178 / 178 |
lung | 99% | 2664.87 | 575 / 578 | 100% | 60.95 | 1153 / 1155 |
adipose | 100% | 2887.26 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 51.76 | 29 / 29 |
spleen | 100% | 2780.31 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 52.06 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 32.22 | 1 / 1 |
blood vessel | 100% | 3269.90 | 1334 / 1335 | 0% | 0 | 0 / 0 |
muscle | 99% | 1972.61 | 796 / 803 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 99% | 52.02 | 79 / 80 |
heart | 96% | 1747.35 | 823 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 92% | 1952.20 | 856 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0051123 | Biological process | RNA polymerase II preinitiation complex assembly |
GO_0060261 | Biological process | positive regulation of transcription initiation by RNA polymerase II |
GO_0032968 | Biological process | positive regulation of transcription elongation by RNA polymerase II |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0016592 | Cellular component | mediator complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0070847 | Cellular component | core mediator complex |
GO_0005634 | Cellular component | nucleus |
GO_0008134 | Molecular function | transcription factor binding |
GO_0005515 | Molecular function | protein binding |
GO_0003712 | Molecular function | transcription coregulator activity |
Gene name | MED29 |
Protein name | Mediator of RNA polymerase II transcription subunit 29 (Intersex-like protein) (Mediator complex subunit 29) |
Synonyms | IXL hCG_43365 |
Description | FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. . |
Accessions | B4DUA7 ENST00000596297.1 ENST00000315588.11 [Q9NX70-1] M0R0U2 ENST00000615911.4 M0R3F3 M0R0A0 ENST00000600973.5 ENST00000594368.5 [Q9NX70-2] ENST00000599417.2 Q9NX70 |