MCMDC2 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
glutamatergic neuron	3 studies	26% ± 2%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	3 studies	20% ± 5%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	100%	233.34	2641 / 2642	85%	1.94	596 / 705
prostate	100%	105.13	245 / 245	63%	1.13	317 / 502
breast	96%	80.95	439 / 459	56%	1.33	625 / 1118
adrenal gland	99%	154.53	256 / 258	47%	0.77	109 / 230
intestine	98%	77.05	949 / 966	36%	0.71	191 / 527
uterus	97%	92.36	165 / 170	37%	0.60	171 / 459
skin	95%	89.01	1718 / 1809	38%	0.71	178 / 472
esophagus	97%	71.04	1403 / 1445	36%	0.68	65 / 183
lung	92%	59.58	534 / 578	40%	0.79	458 / 1155
kidney	99%	92.17	88 / 89	32%	0.49	287 / 901
ovary	99%	116.97	179 / 180	31%	0.52	134 / 430
bladder	95%	80.76	20 / 21	33%	0.57	164 / 504
stomach	92%	52.46	329 / 359	36%	0.84	103 / 286
liver	84%	40.02	190 / 226	24%	0.36	98 / 406
thymus	97%	71.96	632 / 653	8%	0.11	51 / 605
ureter	0%	0	0 / 0	100%	1.03	1 / 1
spleen	100%	77.73	240 / 241	0%	0	0 / 0
muscle	98%	118.56	786 / 803	0%	0	0 / 0
heart	94%	96.52	813 / 861	0%	0	0 / 0
adipose	92%	56.19	1105 / 1204	0%	0	0 / 0
blood vessel	88%	50.40	1180 / 1335	0%	0	0 / 0
pancreas	80%	40.59	263 / 328	7%	0.21	12 / 178
tonsil	0%	0	0 / 0	53%	0.87	24 / 45
eye	0%	0	0 / 0	36%	0.56	29 / 80
peripheral blood	16%	6.41	152 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0