Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 24 studies | 35% ± 19% | |
astrocyte | 21 studies | 86% ± 17% | |
oligodendrocyte precursor cell | 17 studies | 83% ± 26% | |
oligodendrocyte | 15 studies | 71% ± 23% | |
glutamatergic neuron | 13 studies | 80% ± 22% | |
GABAergic neuron | 11 studies | 83% ± 19% | |
endothelial cell | 11 studies | 47% ± 24% | |
microglial cell | 9 studies | 53% ± 20% | |
neuron | 8 studies | 53% ± 23% | |
amacrine cell | 8 studies | 67% ± 29% | |
retinal ganglion cell | 7 studies | 82% ± 20% | |
mesothelial cell | 7 studies | 49% ± 20% | |
interneuron | 6 studies | 84% ± 15% | |
retina horizontal cell | 6 studies | 84% ± 17% | |
Mueller cell | 6 studies | 79% ± 26% | |
macrophage | 5 studies | 37% ± 19% | |
epithelial cell | 5 studies | 38% ± 21% | |
granule cell | 4 studies | 77% ± 22% | |
pericyte | 4 studies | 41% ± 25% | |
smooth muscle cell | 4 studies | 31% ± 12% | |
abnormal cell | 3 studies | 25% ± 11% | |
differentiation-committed oligodendrocyte precursor | 3 studies | 93% ± 4% | |
GABAergic interneuron | 3 studies | 75% ± 29% | |
glial cell | 3 studies | 51% ± 10% | |
progenitor cell | 3 studies | 51% ± 15% | |
GABAergic amacrine cell | 3 studies | 88% ± 4% | |
OFF-bipolar cell | 3 studies | 73% ± 17% | |
ON-bipolar cell | 3 studies | 71% ± 17% | |
glycinergic amacrine cell | 3 studies | 91% ± 3% | |
neural progenitor cell | 3 studies | 73% ± 31% | |
connective tissue cell | 3 studies | 40% ± 20% | |
ependymal cell | 3 studies | 67% ± 9% | |
adventitial cell | 3 studies | 41% ± 23% | |
alveolar macrophage | 3 studies | 49% ± 21% | |
chondrocyte | 3 studies | 42% ± 16% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 11028.36 | 2641 / 2642 | 99% | 87.49 | 700 / 705 |
adrenal gland | 93% | 2267.82 | 240 / 258 | 87% | 21.76 | 200 / 230 |
prostate | 92% | 3337.56 | 225 / 245 | 79% | 14.97 | 396 / 502 |
lung | 98% | 3128.87 | 566 / 578 | 40% | 4.17 | 458 / 1155 |
skin | 19% | 239.70 | 343 / 1809 | 82% | 22.52 | 387 / 472 |
intestine | 73% | 2859.89 | 706 / 966 | 25% | 2.11 | 133 / 527 |
pancreas | 4% | 46.58 | 13 / 328 | 63% | 6.89 | 113 / 178 |
stomach | 29% | 501.36 | 103 / 359 | 38% | 3.50 | 108 / 286 |
ovary | 45% | 628.75 | 81 / 180 | 7% | 0.48 | 28 / 430 |
bladder | 33% | 806.19 | 7 / 21 | 17% | 1.75 | 86 / 504 |
uterus | 35% | 693.02 | 59 / 170 | 13% | 1.55 | 61 / 459 |
breast | 29% | 457.77 | 131 / 459 | 8% | 0.83 | 95 / 1118 |
adipose | 30% | 543.42 | 360 / 1204 | 0% | 0 | 0 / 0 |
esophagus | 8% | 114.49 | 114 / 1445 | 21% | 2.77 | 39 / 183 |
tonsil | 0% | 0 | 0 / 0 | 24% | 7.18 | 11 / 45 |
lymph node | 0% | 0 | 0 / 0 | 21% | 4.36 | 6 / 29 |
heart | 21% | 294.06 | 177 / 861 | 0% | 0 | 0 / 0 |
kidney | 9% | 132.75 | 8 / 89 | 8% | 1.04 | 73 / 901 |
thymus | 6% | 66.73 | 36 / 653 | 4% | 0.34 | 24 / 605 |
blood vessel | 7% | 99.70 | 90 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 4% | 0.39 | 3 / 80 |
peripheral blood | 3% | 41.60 | 27 / 929 | 0% | 0 | 0 / 0 |
liver | 0% | 0 | 0 / 226 | 3% | 0.19 | 11 / 406 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
muscle | 0% | 0 | 0 / 803 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spleen | 0% | 0 | 0 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0007399 | Biological process | nervous system development |
GO_0007155 | Biological process | cell adhesion |
GO_0098552 | Cellular component | side of membrane |
GO_0005829 | Cellular component | cytosol |
GO_0005576 | Cellular component | extracellular region |
GO_0005886 | Cellular component | plasma membrane |
GO_0005515 | Molecular function | protein binding |
Gene name | LSAMP |
Protein name | Limbic system associated membrane protein Limbic system-associated membrane protein (LSAMP) (IgLON family member 3) |
Synonyms | LAMP IGLON3 |
Description | FUNCTION: Mediates selective neuronal growth and axon targeting. Contributes to the guidance of developing axons and remodeling of mature circuits in the limbic system. Essential for normal growth of the hippocampal mossy fiber projection (By similarity). . |
Accessions | ENST00000474851.1 Q13449 C9J5G3 ENST00000333617.8 ENST00000490035.7 H3BLU2 |