Name | Number of supported studies | Average coverage | |
---|---|---|---|
type I pneumocyte | 9 studies | 29% ± 12% | |
endothelial cell | 6 studies | 20% ± 5% | |
type II pneumocyte | 6 studies | 31% ± 6% | |
epithelial cell | 5 studies | 26% ± 12% | |
club cell | 5 studies | 23% ± 6% | |
retinal pigment epithelial cell | 3 studies | 19% ± 1% | |
glutamatergic neuron | 3 studies | 33% ± 4% | |
basal cell | 3 studies | 32% ± 19% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
lung | 3 studies | 19% ± 2% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1206.57 | 1445 / 1445 | 100% | 29.90 | 183 / 183 |
pancreas | 100% | 1904.82 | 328 / 328 | 100% | 17.73 | 178 / 178 |
lung | 100% | 1842.37 | 577 / 578 | 100% | 24.32 | 1154 / 1155 |
stomach | 100% | 1230.03 | 359 / 359 | 100% | 35.07 | 285 / 286 |
intestine | 100% | 1043.31 | 965 / 966 | 100% | 31.82 | 525 / 527 |
prostate | 100% | 1175.95 | 245 / 245 | 99% | 18.34 | 498 / 502 |
breast | 100% | 837.75 | 459 / 459 | 99% | 25.60 | 1106 / 1118 |
thymus | 100% | 986.26 | 653 / 653 | 98% | 15.96 | 593 / 605 |
bladder | 100% | 786.10 | 21 / 21 | 97% | 20.71 | 490 / 504 |
uterus | 99% | 524.70 | 169 / 170 | 97% | 18.42 | 444 / 459 |
ovary | 99% | 552.92 | 179 / 180 | 95% | 11.27 | 410 / 430 |
kidney | 100% | 855.29 | 89 / 89 | 95% | 15.17 | 854 / 901 |
liver | 100% | 1614.08 | 226 / 226 | 94% | 12.46 | 380 / 406 |
skin | 100% | 1089.70 | 1808 / 1809 | 93% | 16.56 | 437 / 472 |
adrenal gland | 100% | 1515.40 | 258 / 258 | 71% | 6.15 | 163 / 230 |
brain | 89% | 428.83 | 2340 / 2642 | 58% | 3.67 | 412 / 705 |
spleen | 100% | 483.68 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 19.53 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 6.38 | 1 / 1 |
muscle | 100% | 781.01 | 802 / 803 | 0% | 0 | 0 / 0 |
adipose | 100% | 702.88 | 1202 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 733.19 | 1329 / 1335 | 0% | 0 | 0 / 0 |
heart | 96% | 711.53 | 827 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 62% | 4.66 | 18 / 29 |
eye | 0% | 0 | 0 / 0 | 54% | 4.87 | 43 / 80 |
peripheral blood | 52% | 260.14 | 480 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0030182 | Biological process | neuron differentiation |
GO_0061351 | Biological process | neural precursor cell proliferation |
GO_0005886 | Cellular component | plasma membrane |
GO_0030165 | Molecular function | PDZ domain binding |
GO_0004842 | Molecular function | ubiquitin-protein transferase activity |
GO_0042802 | Molecular function | identical protein binding |
GO_0005515 | Molecular function | protein binding |
GO_0046872 | Molecular function | metal ion binding |
Gene name | LNX2 |
Protein name | Ligand of Numb protein X 2 (Numb-binding protein 2) (PDZ domain-containing RING finger protein 1) |
Synonyms | PDZRN1 |
Description | |
Accessions | ENST00000649248.1 Q8N448 ENST00000316334.5 |