Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 45 studies | 39% ± 18% | |
fibroblast | 44 studies | 43% ± 18% | |
pericyte | 38 studies | 61% ± 20% | |
smooth muscle cell | 29 studies | 47% ± 21% | |
endothelial cell of lymphatic vessel | 22 studies | 38% ± 14% | |
astrocyte | 18 studies | 54% ± 16% | |
connective tissue cell | 15 studies | 40% ± 16% | |
capillary endothelial cell | 13 studies | 37% ± 16% | |
endothelial cell of vascular tree | 12 studies | 33% ± 14% | |
glutamatergic neuron | 11 studies | 47% ± 17% | |
oligodendrocyte precursor cell | 11 studies | 44% ± 18% | |
myofibroblast cell | 11 studies | 34% ± 18% | |
vein endothelial cell | 10 studies | 29% ± 15% | |
adipocyte | 9 studies | 42% ± 19% | |
oligodendrocyte | 8 studies | 26% ± 13% | |
endothelial cell of artery | 7 studies | 23% ± 7% | |
retina horizontal cell | 6 studies | 58% ± 17% | |
cardiac muscle cell | 6 studies | 53% ± 21% | |
GABAergic neuron | 5 studies | 30% ± 12% | |
amacrine cell | 5 studies | 56% ± 20% | |
type II pneumocyte | 5 studies | 23% ± 10% | |
retinal pigment epithelial cell | 4 studies | 39% ± 17% | |
adventitial cell | 4 studies | 45% ± 11% | |
glomerular endothelial cell | 3 studies | 28% ± 9% | |
abnormal cell | 3 studies | 24% ± 9% | |
neuron | 3 studies | 28% ± 1% | |
extravillous trophoblast | 3 studies | 37% ± 6% | |
endocardial cell | 3 studies | 40% ± 4% | |
GABAergic amacrine cell | 3 studies | 55% ± 5% | |
glycinergic amacrine cell | 3 studies | 48% ± 7% | |
basal cell | 3 studies | 37% ± 15% | |
ependymal cell | 3 studies | 37% ± 18% | |
epithelial cell | 3 studies | 42% ± 1% | |
interneuron | 3 studies | 46% ± 19% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 12948.44 | 459 / 459 | 97% | 29.17 | 1080 / 1118 |
brain | 96% | 3500.95 | 2530 / 2642 | 100% | 64.36 | 704 / 705 |
thymus | 100% | 6641.76 | 650 / 653 | 95% | 29.71 | 573 / 605 |
lung | 100% | 7962.47 | 578 / 578 | 93% | 18.92 | 1072 / 1155 |
skin | 91% | 4151.60 | 1652 / 1809 | 96% | 32.54 | 452 / 472 |
prostate | 92% | 3056.23 | 226 / 245 | 94% | 18.76 | 470 / 502 |
adrenal gland | 91% | 3284.31 | 236 / 258 | 91% | 34.60 | 210 / 230 |
bladder | 100% | 4614.24 | 21 / 21 | 77% | 14.22 | 387 / 504 |
uterus | 99% | 7398.60 | 169 / 170 | 74% | 19.53 | 339 / 459 |
kidney | 81% | 2727.21 | 72 / 89 | 84% | 44.50 | 754 / 901 |
esophagus | 83% | 4313.72 | 1202 / 1445 | 73% | 11.69 | 133 / 183 |
intestine | 82% | 3720.04 | 790 / 966 | 70% | 12.71 | 370 / 527 |
ovary | 90% | 4558.01 | 162 / 180 | 57% | 8.25 | 247 / 430 |
stomach | 46% | 1926.40 | 164 / 359 | 77% | 16.11 | 220 / 286 |
pancreas | 8% | 166.46 | 26 / 328 | 97% | 38.45 | 173 / 178 |
adipose | 100% | 13583.19 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 12774.05 | 1335 / 1335 | 0% | 0 | 0 / 0 |
heart | 100% | 5827.81 | 857 / 861 | 0% | 0 | 0 / 0 |
spleen | 89% | 2772.76 | 215 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 89% | 13.25 | 40 / 45 |
lymph node | 0% | 0 | 0 / 0 | 62% | 7.99 | 18 / 29 |
muscle | 61% | 1376.85 | 491 / 803 | 0% | 0 | 0 / 0 |
liver | 4% | 63.87 | 8 / 226 | 54% | 8.56 | 219 / 406 |
eye | 0% | 0 | 0 / 0 | 41% | 5.12 | 33 / 80 |
peripheral blood | 0% | 2.12 | 1 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0016020 | Cellular component | membrane |
Gene name | LHFPL6 |
Protein name | LHFPL tetraspan subfamily member 6 protein (Lipoma HMGIC fusion partner) |
Synonyms | LHFP |
Description | |
Accessions | Q9Y693 ENST00000379589.4 ENST00000648377.1 |