Insufficient scRNA-seq data for expression of LCN1 at single-cell level.
Insufficient scRNA-seq data for expression of LCN1 at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
spleen | 77% | 9.95 | 185 / 241 | 0% | 0 | 0 / 0 |
brain | 43% | 8.89 | 1127 / 2642 | 4% | 0.15 | 25 / 705 |
ovary | 6% | 1.31 | 10 / 180 | 35% | 8.73 | 150 / 430 |
lung | 29% | 2.54 | 165 / 578 | 4% | 0.12 | 44 / 1155 |
adrenal gland | 4% | 0.36 | 10 / 258 | 25% | 2.46 | 58 / 230 |
heart | 23% | 6.13 | 202 / 861 | 0% | 0 | 0 / 0 |
pancreas | 6% | 0.55 | 20 / 328 | 15% | 3.54 | 26 / 178 |
blood vessel | 20% | 10.63 | 271 / 1335 | 0% | 0 | 0 / 0 |
bladder | 14% | 1.00 | 3 / 21 | 4% | 0.14 | 22 / 504 |
uterus | 6% | 0.80 | 10 / 170 | 8% | 0.34 | 37 / 459 |
esophagus | 9% | 134.16 | 126 / 1445 | 3% | 0.05 | 5 / 183 |
skin | 5% | 0.28 | 96 / 1809 | 6% | 0.97 | 26 / 472 |
lymph node | 0% | 0 | 0 / 0 | 10% | 0.44 | 3 / 29 |
tonsil | 0% | 0 | 0 / 0 | 9% | 5.35 | 4 / 45 |
breast | 4% | 0.23 | 19 / 459 | 4% | 0.08 | 46 / 1118 |
stomach | 3% | 0.13 | 11 / 359 | 3% | 1.85 | 10 / 286 |
prostate | 5% | 1.55 | 13 / 245 | 1% | 0.16 | 6 / 502 |
intestine | 3% | 0.12 | 29 / 966 | 3% | 0.13 | 16 / 527 |
adipose | 5% | 0.63 | 55 / 1204 | 0% | 0 | 0 / 0 |
kidney | 0% | 0 | 0 / 89 | 4% | 0.52 | 36 / 901 |
muscle | 3% | 0.18 | 27 / 803 | 0% | 0 | 0 / 0 |
thymus | 2% | 0.10 | 10 / 653 | 1% | 1.46 | 7 / 605 |
liver | 0% | 0.02 | 1 / 226 | 1% | 0.02 | 5 / 406 |
peripheral blood | 1% | 0.02 | 5 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0006508 | Biological process | proteolysis |
GO_0050909 | Biological process | sensory perception of taste |
GO_0005615 | Cellular component | extracellular space |
GO_0005576 | Cellular component | extracellular region |
GO_0031404 | Molecular function | chloride ion binding |
GO_0004869 | Molecular function | cysteine-type endopeptidase inhibitor activity |
GO_0005102 | Molecular function | signaling receptor binding |
GO_0005515 | Molecular function | protein binding |
GO_0008270 | Molecular function | zinc ion binding |
Gene name | LCN1 |
Protein name | Lipocalin-1 (Tear lipocalin) (Tlc) (Tear prealbumin) (TP) (von Ebner gland protein) (VEG protein) |
Synonyms | VEGP |
Description | FUNCTION: Could play a role in taste reception. Could be necessary for the concentration and delivery of sapid molecules in the gustatory system. Can bind various ligands, with chemical structures ranging from lipids and retinoids to the macrocyclic antibiotic rifampicin and even to microbial siderophores. Exhibits an extremely wide ligand pocket. |
Accessions | ENST00000371781.4 P31025 ENST00000263598.6 |