Name | Number of supported studies | Average coverage | |
---|---|---|---|
epithelial cell | 3 studies | 27% ± 7% | |
GABAergic neuron | 3 studies | 33% ± 9% | |
glutamatergic neuron | 3 studies | 44% ± 12% | |
dendritic cell | 3 studies | 22% ± 1% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 32% ± 14% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
bladder | 100% | 3832.48 | 21 / 21 | 100% | 15.60 | 504 / 504 |
esophagus | 100% | 3554.29 | 1445 / 1445 | 100% | 11.30 | 183 / 183 |
intestine | 100% | 3627.14 | 966 / 966 | 100% | 15.19 | 527 / 527 |
stomach | 100% | 2414.76 | 359 / 359 | 100% | 14.17 | 286 / 286 |
uterus | 100% | 5080.59 | 170 / 170 | 100% | 17.91 | 459 / 459 |
brain | 100% | 5545.69 | 2641 / 2642 | 100% | 16.61 | 705 / 705 |
skin | 100% | 3191.26 | 1808 / 1809 | 100% | 16.43 | 472 / 472 |
thymus | 100% | 3396.55 | 653 / 653 | 100% | 14.28 | 604 / 605 |
breast | 100% | 3410.66 | 459 / 459 | 100% | 17.05 | 1114 / 1118 |
prostate | 100% | 3877.83 | 245 / 245 | 100% | 13.98 | 500 / 502 |
ovary | 100% | 5249.26 | 180 / 180 | 100% | 10.26 | 428 / 430 |
kidney | 100% | 2151.75 | 89 / 89 | 99% | 11.05 | 895 / 901 |
lung | 99% | 2508.34 | 575 / 578 | 100% | 12.44 | 1151 / 1155 |
pancreas | 100% | 1707.40 | 327 / 328 | 99% | 10.81 | 177 / 178 |
adrenal gland | 100% | 2872.34 | 258 / 258 | 99% | 10.67 | 228 / 230 |
liver | 99% | 1360.61 | 223 / 226 | 100% | 10.33 | 406 / 406 |
adipose | 100% | 3115.81 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 13.11 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 22.98 | 29 / 29 |
spleen | 100% | 3197.10 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 17.30 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 6.90 | 1 / 1 |
blood vessel | 100% | 3259.34 | 1334 / 1335 | 0% | 0 | 0 / 0 |
muscle | 99% | 1700.15 | 794 / 803 | 0% | 0 | 0 / 0 |
heart | 97% | 1662.14 | 831 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 67% | 1613.12 | 622 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0000460 | Biological process | maturation of 5.8S rRNA |
GO_0006364 | Biological process | rRNA processing |
GO_0000470 | Biological process | maturation of LSU-rRNA |
GO_0030687 | Cellular component | preribosome, large subunit precursor |
GO_0005730 | Cellular component | nucleolus |
GO_0090730 | Cellular component | Las1 complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0071339 | Cellular component | MLL1 complex |
GO_0016020 | Cellular component | membrane |
GO_0004519 | Molecular function | endonuclease activity |
GO_0005515 | Molecular function | protein binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | LAS1L |
Protein name | Ribosomal biogenesis protein LAS1L (Endoribonuclease LAS1L) (EC 3.1.-.-) (Protein LAS1 homolog) LAS1 like ribosome biogenesis factor |
Synonyms | MSTP060 |
Description | FUNCTION: Required for the synthesis of the 60S ribosomal subunit and maturation of the 28S rRNA . Functions as a component of the Five Friends of Methylated CHTOP (5FMC) complex; the 5FMC complex is recruited to ZNF148 by methylated CHTOP, leading to desumoylation of ZNF148 and subsequent transactivation of ZNF148 target genes . Required for the efficient pre-rRNA processing at both ends of internal transcribed spacer 2 (ITS2) . . |
Accessions | ENST00000469091.1 A0A7I2V5R7 A0A7I2V4E5 ENST00000374804.9 [Q9Y4W2-3] A0A7I2V3R6 R4GNF7 ENST00000678956.1 ENST00000484069.1 [Q9Y4W2-4] ENST00000374811.8 [Q9Y4W2-1] ENST00000677969.1 Q9Y4W2 ENST00000677087.1 ENST00000374807.9 [Q9Y4W2-2] A0A7I2V653 A0A7I2V3Q3 ENST00000678823.1 A0A7I2V4V0 ENST00000676986.1 ENST00000677056.1 A0A7I2YQI7 ENST00000678570.1 |