Name | Number of supported studies | Average coverage | |
---|---|---|---|
basal cell | 5 studies | 44% ± 17% | |
club cell | 4 studies | 34% ± 25% | |
epithelial cell | 4 studies | 52% ± 30% | |
respiratory goblet cell | 4 studies | 36% ± 5% | |
squamous epithelial cell | 4 studies | 52% ± 26% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
esophagus | 3 studies | 50% ± 14% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 83% | 582125.96 | 1199 / 1445 | 50% | 1110.66 | 92 / 183 |
uterus | 71% | 3651.66 | 121 / 170 | 56% | 275.78 | 258 / 459 |
lung | 90% | 696.35 | 518 / 578 | 36% | 57.51 | 420 / 1155 |
prostate | 91% | 838.54 | 222 / 245 | 33% | 5.78 | 165 / 502 |
ovary | 78% | 304.07 | 141 / 180 | 36% | 11.65 | 154 / 430 |
pancreas | 80% | 329.54 | 264 / 328 | 24% | 20.47 | 42 / 178 |
ureter | 0% | 0 | 0 / 0 | 100% | 4.22 | 1 / 1 |
bladder | 57% | 353.52 | 12 / 21 | 37% | 96.93 | 185 / 504 |
liver | 77% | 227.49 | 173 / 226 | 2% | 0.57 | 7 / 406 |
spleen | 78% | 261.51 | 188 / 241 | 0% | 0 | 0 / 0 |
stomach | 74% | 1933.42 | 267 / 359 | 3% | 1.59 | 10 / 286 |
adrenal gland | 77% | 266.29 | 198 / 258 | 0% | 0 | 0 / 230 |
skin | 63% | 604.47 | 1144 / 1809 | 10% | 9.88 | 47 / 472 |
tonsil | 0% | 0 | 0 / 0 | 71% | 528.19 | 32 / 45 |
intestine | 59% | 210.32 | 574 / 966 | 8% | 149.51 | 42 / 527 |
kidney | 57% | 135.60 | 51 / 89 | 1% | 0.16 | 8 / 901 |
breast | 48% | 196.24 | 221 / 459 | 9% | 9.56 | 105 / 1118 |
thymus | 50% | 187.52 | 327 / 653 | 1% | 0.27 | 5 / 605 |
blood vessel | 44% | 167.48 | 593 / 1335 | 0% | 0 | 0 / 0 |
peripheral blood | 42% | 151.19 | 393 / 929 | 0% | 0 | 0 / 0 |
heart | 42% | 107.88 | 363 / 861 | 0% | 0 | 0 / 0 |
adipose | 42% | 250.99 | 505 / 1204 | 0% | 0 | 0 / 0 |
muscle | 37% | 364.04 | 296 / 803 | 0% | 0 | 0 / 0 |
brain | 34% | 100.09 | 896 / 2642 | 0% | 0.02 | 2 / 705 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0045109 | Biological process | intermediate filament organization |
GO_0031424 | Biological process | keratinization |
GO_0007010 | Biological process | cytoskeleton organization |
GO_0050680 | Biological process | negative regulation of epithelial cell proliferation |
GO_0030855 | Biological process | epithelial cell differentiation |
GO_0005882 | Cellular component | intermediate filament |
GO_0045111 | Cellular component | intermediate filament cytoskeleton |
GO_0009986 | Cellular component | cell surface |
GO_0005829 | Cellular component | cytosol |
GO_0045095 | Cellular component | keratin filament |
GO_0005634 | Cellular component | nucleus |
GO_0030280 | Molecular function | structural constituent of skin epidermis |
GO_0005515 | Molecular function | protein binding |
Gene name | KRT4 |
Protein name | Keratin, type II cytoskeletal 4 (Cytokeratin-4) (CK-4) (Keratin-4) (K4) (Type-II keratin Kb4) KRT4 protein Keratin 4 |
Synonyms | CYK4 |
Description | |
Accessions | ENST00000551956.2 F8VZR6 F8VX05 ENST00000548097.5 ENST00000552668.1 Q6PIN2 P19013 |