Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
lung | 100% | 2732.54 | 578 / 578 | 81% | 6.85 | 934 / 1155 |
stomach | 85% | 422.70 | 304 / 359 | 66% | 3.08 | 189 / 286 |
thymus | 78% | 378.42 | 512 / 653 | 71% | 5.45 | 429 / 605 |
intestine | 88% | 945.14 | 853 / 966 | 59% | 2.81 | 310 / 527 |
prostate | 87% | 521.83 | 212 / 245 | 58% | 2.64 | 290 / 502 |
kidney | 65% | 312.54 | 58 / 89 | 78% | 5.92 | 707 / 901 |
liver | 81% | 287.54 | 182 / 226 | 63% | 3.83 | 254 / 406 |
bladder | 71% | 633.33 | 15 / 21 | 57% | 3.48 | 286 / 504 |
breast | 64% | 270.01 | 296 / 459 | 59% | 3.54 | 664 / 1118 |
uterus | 61% | 196.57 | 104 / 170 | 58% | 3.71 | 264 / 459 |
skin | 48% | 180.51 | 864 / 1809 | 64% | 4.73 | 303 / 472 |
pancreas | 19% | 58.73 | 62 / 328 | 83% | 8.37 | 147 / 178 |
lymph node | 0% | 0 | 0 / 0 | 100% | 16.22 | 29 / 29 |
spleen | 100% | 6215.57 | 241 / 241 | 0% | 0 | 0 / 0 |
esophagus | 55% | 244.16 | 797 / 1445 | 43% | 1.90 | 79 / 183 |
peripheral blood | 97% | 20686.81 | 897 / 929 | 0% | 0 | 0 / 0 |
adipose | 89% | 577.30 | 1066 / 1204 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 87% | 7.71 | 39 / 45 |
adrenal gland | 56% | 192.07 | 144 / 258 | 20% | 0.70 | 47 / 230 |
blood vessel | 54% | 272.08 | 715 / 1335 | 0% | 0 | 0 / 0 |
heart | 42% | 136.03 | 362 / 861 | 0% | 0 | 0 / 0 |
ovary | 21% | 70.19 | 38 / 180 | 19% | 0.72 | 83 / 430 |
brain | 19% | 138.54 | 511 / 2642 | 12% | 0.55 | 88 / 705 |
eye | 0% | 0 | 0 / 0 | 21% | 0.86 | 17 / 80 |
muscle | 2% | 4.52 | 16 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0046629 | Biological process | gamma-delta T cell activation |
GO_0030593 | Biological process | neutrophil chemotaxis |
GO_0060054 | Biological process | positive regulation of epithelial cell proliferation involved in wound healing |
GO_0072672 | Biological process | neutrophil extravasation |
GO_0007157 | Biological process | heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules |
GO_0035696 | Biological process | monocyte extravasation |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005886 | Cellular component | plasma membrane |
GO_0005923 | Cellular component | bicellular tight junction |
GO_0050839 | Molecular function | cell adhesion molecule binding |
GO_0042803 | Molecular function | protein homodimerization activity |
GO_0005178 | Molecular function | integrin binding |
Gene name | JAML |
Protein name | Junctional adhesion molecule-like (Adhesion molecule interacting with CXADR antigen 1) (Dendritic cell-specific protein CREA7-1) AMICA1 protein AMICA1 protein (cDNA FLJ58210, highly similar to Junctional adhesion molecule-like) Junction adhesion molecule like |
Synonyms | UNQ722/PRO1387 AMICA1 |
Description | FUNCTION: Transmembrane protein of the plasma membrane of leukocytes that control their migration and activation through interaction with CXADR, a plasma membrane receptor found on adjacent epithelial and endothelial cells. The interaction between both receptors mediates the activation of gamma-delta T-cells, a subpopulation of T-cells residing in epithelia and involved in tissue homeostasis and repair. Upon epithelial CXADR-binding, JAML induces downstream cell signaling events in gamma-delta T-cells through PI3-kinase and MAP kinases. It results in proliferation and production of cytokines and growth factors by T-cells that in turn stimulate epithelial tissues repair. It also controls the transmigration of leukocytes within epithelial and endothelial tissues through adhesive interactions with epithelial and endothelial CXADR. . |
Accessions | ENST00000526620.5 [Q86YT9-4] E9PNS8 E9PR26 E9PKK2 ENST00000525565.1 Q496M2 ENST00000533261.5 Q496M4 ENST00000292067.11 [Q86YT9-2] Q496M3 E9PLF9 ENST00000526595.5 ENST00000356289.10 [Q86YT9-1] ENST00000527877.5 Q86YT9 E9PJJ4 ENST00000524477.5 |