IRX2-DT report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
type I pneumocyte	7 studies	28% ± 11%	Explore
type II pneumocyte	5 studies	28% ± 14%	Explore

II. Expression across tissues

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
prostate	99%	355.87	242 / 245	98%	17.79	493 / 502
breast	100%	592.89	458 / 459	87%	40.71	978 / 1118
lung	99%	641.39	573 / 578	67%	12.51	774 / 1155
thymus	91%	270.97	593 / 653	57%	12.64	347 / 605
skin	100%	556.12	1809 / 1809	33%	3.55	154 / 472
brain	56%	138.97	1471 / 2642	63%	9.80	444 / 705
esophagus	38%	70.23	551 / 1445	70%	10.32	128 / 183
stomach	75%	518.37	269 / 359	33%	3.12	93 / 286
kidney	84%	300.25	75 / 89	12%	1.20	105 / 901
adipose	61%	246.77	729 / 1204	0%	0	0 / 0
tonsil	0%	0	0 / 0	44%	4.14	20 / 45
uterus	4%	3.18	6 / 170	37%	7.17	171 / 459
intestine	0%	0.75	3 / 966	38%	3.45	198 / 527
bladder	14%	17.00	3 / 21	23%	3.08	118 / 504
blood vessel	34%	54.73	449 / 1335	0%	0	0 / 0
pancreas	15%	14.18	48 / 328	16%	3.67	28 / 178
heart	16%	15.01	136 / 861	0%	0	0 / 0
adrenal gland	1%	0.94	3 / 258	7%	1.56	16 / 230
ovary	1%	0.82	1 / 180	4%	0.57	18 / 430
liver	0%	0	0 / 226	4%	0.47	15 / 406
eye	0%	0	0 / 0	3%	0.24	2 / 80
muscle	0%	0.20	2 / 803	0%	0	0 / 0
peripheral blood	0%	0.12	1 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
spleen	0%	0	0 / 241	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1