Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 7 studies | 20% ± 7% | |
GABAergic neuron | 5 studies | 28% ± 10% | |
astrocyte | 5 studies | 26% ± 9% | |
glutamatergic neuron | 4 studies | 36% ± 11% | |
oligodendrocyte precursor cell | 4 studies | 25% ± 7% | |
macrophage | 4 studies | 19% ± 3% | |
oligodendrocyte | 4 studies | 24% ± 4% | |
microglial cell | 3 studies | 21% ± 3% | |
epithelial cell | 3 studies | 18% ± 3% | |
endothelial cell of lymphatic vessel | 3 studies | 16% ± 1% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 5 studies | 31% ± 8% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1187.07 | 1445 / 1445 | 100% | 13.08 | 183 / 183 |
ovary | 100% | 1709.61 | 180 / 180 | 100% | 16.36 | 430 / 430 |
prostate | 100% | 1625.97 | 245 / 245 | 100% | 11.45 | 502 / 502 |
stomach | 100% | 1098.69 | 359 / 359 | 100% | 11.63 | 286 / 286 |
lung | 100% | 1407.93 | 578 / 578 | 100% | 13.59 | 1154 / 1155 |
breast | 100% | 1536.94 | 459 / 459 | 100% | 20.14 | 1117 / 1118 |
uterus | 100% | 1709.97 | 170 / 170 | 100% | 13.63 | 458 / 459 |
bladder | 100% | 1512.00 | 21 / 21 | 100% | 13.30 | 502 / 504 |
thymus | 100% | 1597.33 | 653 / 653 | 100% | 12.70 | 602 / 605 |
brain | 99% | 881.63 | 2627 / 2642 | 100% | 15.17 | 705 / 705 |
skin | 100% | 1514.25 | 1808 / 1809 | 99% | 21.05 | 469 / 472 |
intestine | 100% | 1458.18 | 966 / 966 | 99% | 11.60 | 523 / 527 |
pancreas | 100% | 957.80 | 328 / 328 | 99% | 11.67 | 176 / 178 |
kidney | 100% | 1147.19 | 89 / 89 | 98% | 11.11 | 887 / 901 |
adrenal gland | 100% | 1592.93 | 258 / 258 | 94% | 8.99 | 216 / 230 |
liver | 100% | 867.52 | 226 / 226 | 93% | 6.77 | 376 / 406 |
adipose | 100% | 1398.66 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1318.79 | 1335 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 13.74 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 17.96 | 29 / 29 |
spleen | 100% | 2043.84 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 11.77 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 5.06 | 1 / 1 |
muscle | 99% | 757.19 | 798 / 803 | 0% | 0 | 0 / 0 |
heart | 99% | 771.99 | 852 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 99% | 1489.93 | 916 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0034243 | Biological process | regulation of transcription elongation by RNA polymerase II |
GO_0016180 | Biological process | snRNA processing |
GO_0005730 | Cellular component | nucleolus |
GO_0032039 | Cellular component | integrator complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0005515 | Molecular function | protein binding |
Gene name | INTS4 |
Protein name | Integrator complex subunit 4 Integrator complex subunit 4 (Int4) |
Synonyms | MSTP093 |
Description | FUNCTION: Component of the Integrator (INT) complex, a complex involved in the small nuclear RNAs (snRNA) U1 and U2 transcription and in their 3'-box-dependent processing. The Integrator complex is associated with the C-terminal domain (CTD) of RNA polymerase II largest subunit (POLR2A) and is recruited to the U1 and U2 snRNAs genes (Probable). Mediates recruitment of cytoplasmic dynein to the nuclear envelope, probably as component of the INT complex . . |
Accessions | ENST00000695308.1 F8WAA7 A0A8Q3SHT4 ENST00000695305.1 A0A8Q3SII1 ENST00000695310.1 ENST00000695098.1 A0A8Q3SHR8 ENST00000527522.1 ENST00000695307.1 ENST00000695303.1 ENST00000535943.2 A0A8Q3WKC7 A0A8C8UVZ7 ENST00000433818.6 ENST00000695105.1 A0A8Q3WKW5 ENST00000534064.6 [Q96HW7-1] ENST00000524766.6 ENST00000695096.1 ENST00000695317.1 Q96HW7 A0A8Q3SHL8 ENST00000695309.1 ENST00000695099.1 ENST00000695306.1 A0A8Q3SHU3 ENST00000525931.2 [Q96HW7-2] A0A8Q3SHM4 A0A8Q3WKC2 A0A8V8TLR7 ENST00000695315.1 ENST00000695100.1 [Q96HW7-2] ENST00000695304.1 E9PIM3 A0A8Q3SHK8 ENST00000695101.1 ENST00000695104.1 ENST00000695319.1 A0A8Q3WKC9 A0A8Q3WKB9 ENST00000695316.1 ENST00000695103.1 A0A8Q3WKB5 ENST00000695097.1 ENST00000696971.1 A0A8Q3WKC3 ENST00000534408.5 ENST00000695102.1 ENST00000529807.5 [Q96HW7-2] |