Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 15 studies | 31% ± 17% | |
B cell | 8 studies | 18% ± 1% | |
astrocyte | 8 studies | 38% ± 13% | |
oligodendrocyte | 8 studies | 35% ± 10% | |
adipocyte | 8 studies | 26% ± 8% | |
fibroblast | 8 studies | 21% ± 4% | |
smooth muscle cell | 8 studies | 20% ± 7% | |
T cell | 7 studies | 16% ± 1% | |
glutamatergic neuron | 7 studies | 43% ± 19% | |
GABAergic neuron | 6 studies | 41% ± 14% | |
microglial cell | 6 studies | 31% ± 7% | |
epithelial cell | 6 studies | 32% ± 11% | |
macrophage | 6 studies | 25% ± 5% | |
neuron | 5 studies | 37% ± 21% | |
oligodendrocyte precursor cell | 5 studies | 43% ± 11% | |
myeloid cell | 5 studies | 19% ± 4% | |
endothelial cell of lymphatic vessel | 5 studies | 24% ± 4% | |
natural killer cell | 4 studies | 18% ± 2% | |
cardiac muscle cell | 4 studies | 20% ± 3% | |
dendritic cell | 4 studies | 21% ± 8% | |
mesothelial cell | 4 studies | 22% ± 4% | |
lymphocyte | 4 studies | 22% ± 4% | |
pericyte | 4 studies | 21% ± 5% | |
type I pneumocyte | 4 studies | 23% ± 9% | |
interneuron | 4 studies | 43% ± 20% | |
classical monocyte | 3 studies | 18% ± 2% | |
ciliated cell | 3 studies | 21% ± 4% | |
hepatocyte | 3 studies | 53% ± 19% | |
abnormal cell | 3 studies | 30% ± 19% | |
alveolar macrophage | 3 studies | 22% ± 6% | |
club cell | 3 studies | 22% ± 4% | |
monocyte | 3 studies | 19% ± 2% | |
type II pneumocyte | 3 studies | 23% ± 5% | |
basal cell | 3 studies | 23% ± 12% | |
goblet cell | 3 studies | 31% ± 17% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 2453.06 | 1445 / 1445 | 100% | 10.69 | 183 / 183 |
prostate | 100% | 2337.05 | 245 / 245 | 100% | 5.88 | 501 / 502 |
breast | 100% | 3005.63 | 459 / 459 | 100% | 7.32 | 1115 / 1118 |
lung | 100% | 2774.99 | 578 / 578 | 100% | 5.82 | 1151 / 1155 |
thymus | 100% | 3597.42 | 653 / 653 | 99% | 7.21 | 601 / 605 |
ovary | 100% | 3169.99 | 180 / 180 | 99% | 4.15 | 426 / 430 |
bladder | 100% | 2348.57 | 21 / 21 | 99% | 5.07 | 499 / 504 |
stomach | 100% | 1957.86 | 359 / 359 | 99% | 7.63 | 283 / 286 |
pancreas | 100% | 1503.41 | 328 / 328 | 99% | 6.31 | 176 / 178 |
uterus | 100% | 3064.96 | 170 / 170 | 99% | 4.87 | 453 / 459 |
kidney | 100% | 1788.48 | 89 / 89 | 99% | 5.92 | 889 / 901 |
intestine | 100% | 2652.84 | 966 / 966 | 98% | 5.93 | 516 / 527 |
adrenal gland | 100% | 1838.78 | 258 / 258 | 97% | 4.09 | 224 / 230 |
brain | 98% | 1425.87 | 2579 / 2642 | 100% | 5.51 | 702 / 705 |
skin | 100% | 3108.55 | 1809 / 1809 | 96% | 5.69 | 455 / 472 |
liver | 100% | 1253.23 | 226 / 226 | 89% | 2.64 | 361 / 406 |
adipose | 100% | 2883.16 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 4.64 | 29 / 29 |
muscle | 100% | 1830.06 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 2588.03 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 5.48 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 2.74 | 1 / 1 |
blood vessel | 100% | 2273.34 | 1334 / 1335 | 0% | 0 | 0 / 0 |
heart | 98% | 1435.76 | 841 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 90% | 3.40 | 72 / 80 |
peripheral blood | 78% | 1143.20 | 729 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0033044 | Biological process | regulation of chromosome organization |
GO_0006282 | Biological process | regulation of DNA repair |
GO_0006310 | Biological process | DNA recombination |
GO_0060382 | Biological process | regulation of DNA strand elongation |
GO_1904507 | Biological process | positive regulation of telomere maintenance in response to DNA damage |
GO_0006281 | Biological process | DNA repair |
GO_0045893 | Biological process | positive regulation of DNA-templated transcription |
GO_0045995 | Biological process | regulation of embryonic development |
GO_0006275 | Biological process | regulation of DNA replication |
GO_0006338 | Biological process | chromatin remodeling |
GO_0051726 | Biological process | regulation of cell cycle |
GO_0000723 | Biological process | telomere maintenance |
GO_0045739 | Biological process | positive regulation of DNA repair |
GO_0005654 | Cellular component | nucleoplasm |
GO_0031011 | Cellular component | Ino80 complex |
GO_0005634 | Cellular component | nucleus |
Gene name | INO80D |
Protein name | INO80 complex subunit D Alternative protein INO80D |
Synonyms | |
Description | FUNCTION: Putative regulatory component of the chromatin remodeling INO80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair. |
Accessions | ENST00000635981.1 ENST00000403263.6 ENST00000636453.2 ENST00000637545.1 C9JLZ4 ENST00000424117.5 ENST00000414320.1 L8E8T9 C9JLV2 Q53TQ3 |