Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 18 studies | 43% ± 21% | |
oligodendrocyte | 14 studies | 51% ± 17% | |
glutamatergic neuron | 9 studies | 36% ± 21% | |
oligodendrocyte precursor cell | 9 studies | 25% ± 5% | |
retinal cone cell | 6 studies | 51% ± 24% | |
GABAergic neuron | 6 studies | 47% ± 14% | |
Mueller cell | 4 studies | 33% ± 17% | |
retinal rod cell | 4 studies | 46% ± 8% | |
interneuron | 4 studies | 41% ± 16% | |
endothelial cell | 3 studies | 27% ± 7% | |
glial cell | 3 studies | 23% ± 6% | |
glycinergic amacrine cell | 3 studies | 32% ± 10% | |
ependymal cell | 3 studies | 49% ± 19% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 96% | 1574.74 | 2529 / 2642 | 99% | 33.84 | 699 / 705 |
adrenal gland | 96% | 1082.86 | 247 / 258 | 43% | 4.46 | 100 / 230 |
ovary | 97% | 1443.02 | 175 / 180 | 23% | 1.46 | 101 / 430 |
skin | 17% | 44.04 | 308 / 1809 | 92% | 35.64 | 434 / 472 |
eye | 0% | 0 | 0 / 0 | 100% | 22.96 | 80 / 80 |
esophagus | 69% | 418.53 | 992 / 1445 | 29% | 2.57 | 53 / 183 |
pancreas | 77% | 268.05 | 254 / 328 | 16% | 0.79 | 29 / 178 |
kidney | 65% | 266.81 | 58 / 89 | 7% | 0.60 | 67 / 901 |
muscle | 72% | 316.28 | 576 / 803 | 0% | 0 | 0 / 0 |
intestine | 63% | 375.94 | 607 / 966 | 2% | 0.09 | 10 / 527 |
heart | 40% | 127.59 | 343 / 861 | 0% | 0 | 0 / 0 |
stomach | 32% | 204.48 | 116 / 359 | 2% | 0.10 | 7 / 286 |
lung | 1% | 1.13 | 3 / 578 | 29% | 2.68 | 335 / 1155 |
bladder | 5% | 15.29 | 1 / 21 | 19% | 1.23 | 96 / 504 |
prostate | 16% | 51.76 | 40 / 245 | 0% | 0.01 | 1 / 502 |
tonsil | 0% | 0 | 0 / 0 | 13% | 1.24 | 6 / 45 |
thymus | 2% | 3.87 | 11 / 653 | 10% | 0.93 | 59 / 605 |
uterus | 3% | 8.11 | 5 / 170 | 8% | 0.61 | 37 / 459 |
blood vessel | 5% | 15.33 | 62 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 3% | 0.41 | 1 / 29 |
adipose | 3% | 8.10 | 35 / 1204 | 0% | 0 | 0 / 0 |
breast | 2% | 4.09 | 8 / 459 | 1% | 0.07 | 7 / 1118 |
liver | 0% | 0 | 0 / 226 | 1% | 0.14 | 5 / 406 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spleen | 0% | 0 | 0 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0098742 | Biological process | cell-cell adhesion via plasma-membrane adhesion molecules |
GO_0045185 | Biological process | maintenance of protein location |
GO_0061885 | Biological process | positive regulation of mini excitatory postsynaptic potential |
GO_0007156 | Biological process | homophilic cell adhesion via plasma membrane adhesion molecules |
GO_1900273 | Biological process | positive regulation of long-term synaptic potentiation |
GO_0005911 | Cellular component | cell-cell junction |
GO_0060076 | Cellular component | excitatory synapse |
GO_0005886 | Cellular component | plasma membrane |
GO_0014069 | Cellular component | postsynaptic density |
GO_0035255 | Molecular function | ionotropic glutamate receptor binding |
GO_0005515 | Molecular function | protein binding |
Gene name | IGSF11 |
Protein name | Immunoglobulin superfamily member 11 Alternative protein IGSF11 Immunoglobulin superfamily member 11 (IgSF11) (Brain and testis-specific immunoglobulin superfamily protein) (Bt-IGSF) (V-set and immunoglobulin domain-containing protein 3) |
Synonyms | CXADRL1 BTIGSF VSIG3 |
Description | FUNCTION: Functions as a cell adhesion molecule through homophilic interaction. Stimulates cell growth. . |
Accessions | C9JAD3 ENST00000393775.7 [Q5DX21-1] C9JBA5 L8E968 ENST00000491903.1 ENST00000480431.5 ENST00000441144.6 [Q5DX21-3] ENST00000425327.6 [Q5DX21-2] ENST00000354673.6 [Q5DX21-2] C9IZX3 ENST00000489689.5 ENST00000483401.5 Q5DX21 C9JMW0 |