HYDIN report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
ciliated cell	19 studies	67% ± 16%	Explore
astrocyte	10 studies	29% ± 16%	Explore
glutamatergic neuron	7 studies	46% ± 17%	Explore
oligodendrocyte precursor cell	6 studies	28% ± 12%	Explore
deuterosomal cell	4 studies	21% ± 6%	Explore
retinal rod cell	4 studies	27% ± 11%	Explore
GABAergic neuron	4 studies	41% ± 6%	Explore
oligodendrocyte	4 studies	28% ± 15%	Explore
epithelial cell	3 studies	38% ± 23%	Explore
retinal cone cell	3 studies	41% ± 16%	Explore
ependymal cell	3 studies	79% ± 7%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	10 studies	33% ± 15%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
kidney	100%	312.56	89 / 89	30%	0.66	273 / 901
brain	95%	325.44	2518 / 2642	16%	0.46	114 / 705
thymus	100%	462.84	652 / 653	8%	0.13	49 / 605
pancreas	98%	120.89	321 / 328	3%	0.05	5 / 178
ovary	65%	54.42	117 / 180	19%	0.45	83 / 430
lung	74%	541.88	425 / 578	7%	0.21	79 / 1155
prostate	64%	94.20	156 / 245	1%	0.02	7 / 502
uterus	55%	135.52	94 / 170	4%	0.11	20 / 459
breast	40%	35.81	185 / 459	3%	0.05	35 / 1118
esophagus	22%	12.64	313 / 1445	1%	0.02	2 / 183
adrenal gland	21%	12.02	54 / 258	1%	0.02	3 / 230
liver	22%	28.89	49 / 226	0%	0.01	2 / 406
bladder	19%	9.05	4 / 21	1%	0.01	4 / 504
intestine	17%	9.32	165 / 966	1%	0.02	4 / 527
blood vessel	6%	3.05	79 / 1335	0%	0	0 / 0
stomach	5%	3.22	19 / 359	0%	0.01	1 / 286
heart	5%	2.89	44 / 861	0%	0	0 / 0
adipose	3%	1.67	36 / 1204	0%	0	0 / 0
skin	1%	0.48	14 / 1809	1%	0.01	4 / 472
muscle	0%	0.26	2 / 803	0%	0	0 / 0
peripheral blood	0%	1.46	2 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
eye	0%	0	0 / 0	0%	0	0 / 80
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
spleen	0%	0	0 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	0%	0	0 / 45
ureter	0%	0	0 / 0	0%	0	0 / 1