HUNK report

Query

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
GABAergic neuron	7 studies	36% ± 18%	Explore
interneuron	6 studies	27% ± 5%	Explore
glutamatergic neuron	5 studies	36% ± 12%	Explore
GABAergic interneuron	3 studies	26% ± 4%	Explore
oligodendrocyte precursor cell	3 studies	25% ± 2%	Explore
GABAergic amacrine cell	3 studies	31% ± 5%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	3 studies	43% ± 7%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
kidney	100%	983.09	89 / 89	75%	6.58	675 / 901
intestine	97%	476.23	940 / 966	74%	11.20	388 / 527
ovary	68%	218.36	123 / 180	94%	11.24	403 / 430
pancreas	100%	973.08	328 / 328	54%	2.09	97 / 178
brain	86%	436.31	2272 / 2642	68%	4.34	480 / 705
uterus	89%	1156.58	152 / 170	61%	5.38	281 / 459
bladder	100%	620.05	21 / 21	42%	4.74	213 / 504
stomach	71%	122.15	256 / 359	70%	10.38	200 / 286
breast	82%	344.24	377 / 459	49%	2.91	543 / 1118
lung	75%	208.67	432 / 578	44%	2.69	508 / 1155
prostate	95%	281.35	233 / 245	21%	0.76	105 / 502
skin	75%	473.47	1348 / 1809	33%	2.33	157 / 472
esophagus	78%	155.30	1134 / 1445	29%	1.58	53 / 183
eye	0%	0	0 / 0	83%	5.43	66 / 80
liver	55%	82.66	125 / 226	26%	3.05	105 / 406
adipose	74%	224.18	893 / 1204	0%	0	0 / 0
adrenal gland	31%	45.31	81 / 258	37%	3.35	84 / 230
tonsil	0%	0	0 / 0	58%	3.13	26 / 45
thymus	34%	54.48	224 / 653	14%	0.82	82 / 605
heart	27%	60.38	234 / 861	0%	0	0 / 0
blood vessel	17%	40.08	230 / 1335	0%	0	0 / 0
muscle	4%	4.38	30 / 803	0%	0	0 / 0
lymph node	0%	0	0 / 0	3%	0.08	1 / 29
spleen	2%	2.41	6 / 241	0%	0	0 / 0
peripheral blood	1%	1.32	9 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1