Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 10 studies | 31% ± 15% | |
type I pneumocyte | 9 studies | 27% ± 6% | |
adipocyte | 9 studies | 53% ± 12% | |
pericyte | 9 studies | 20% ± 4% | |
smooth muscle cell | 8 studies | 25% ± 5% | |
endothelial cell | 8 studies | 23% ± 5% | |
epithelial cell | 8 studies | 30% ± 12% | |
type II pneumocyte | 8 studies | 29% ± 8% | |
macrophage | 8 studies | 21% ± 4% | |
fibroblast | 7 studies | 20% ± 5% | |
cardiac muscle cell | 5 studies | 43% ± 10% | |
ciliated cell | 5 studies | 21% ± 6% | |
hepatocyte | 5 studies | 50% ± 20% | |
glutamatergic neuron | 5 studies | 35% ± 11% | |
retinal pigment epithelial cell | 4 studies | 23% ± 10% | |
goblet cell | 4 studies | 18% ± 3% | |
club cell | 4 studies | 21% ± 5% | |
interneuron | 4 studies | 36% ± 16% | |
conventional dendritic cell | 3 studies | 21% ± 4% | |
epithelial cell of proximal tubule | 3 studies | 17% ± 2% | |
myeloid cell | 3 studies | 17% ± 1% | |
muscle cell | 3 studies | 23% ± 8% | |
GABAergic neuron | 3 studies | 28% ± 9% | |
dendritic cell | 3 studies | 29% ± 8% | |
abnormal cell | 3 studies | 28% ± 15% | |
intestinal crypt stem cell | 3 studies | 20% ± 4% | |
basal cell | 3 studies | 23% ± 4% | |
transit amplifying cell | 3 studies | 26% ± 5% | |
plasmacytoid dendritic cell | 3 studies | 21% ± 3% | |
oligodendrocyte | 3 studies | 28% ± 8% | |
oligodendrocyte precursor cell | 3 studies | 34% ± 21% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
liver | 100% | 6626.79 | 226 / 226 | 100% | 103.33 | 406 / 406 |
stomach | 100% | 2518.03 | 359 / 359 | 100% | 62.10 | 286 / 286 |
esophagus | 100% | 2650.10 | 1444 / 1445 | 100% | 51.03 | 183 / 183 |
intestine | 100% | 2627.47 | 966 / 966 | 100% | 63.28 | 526 / 527 |
thymus | 100% | 2400.93 | 652 / 653 | 100% | 58.01 | 604 / 605 |
kidney | 100% | 4025.35 | 89 / 89 | 100% | 74.89 | 898 / 901 |
bladder | 100% | 3345.57 | 21 / 21 | 100% | 64.18 | 502 / 504 |
prostate | 100% | 1897.85 | 244 / 245 | 100% | 54.93 | 502 / 502 |
ovary | 100% | 4360.46 | 180 / 180 | 100% | 38.53 | 428 / 430 |
breast | 100% | 3684.85 | 459 / 459 | 99% | 66.14 | 1111 / 1118 |
uterus | 100% | 2311.52 | 170 / 170 | 99% | 49.17 | 456 / 459 |
lung | 99% | 2513.78 | 573 / 578 | 100% | 45.68 | 1151 / 1155 |
adrenal gland | 100% | 6738.00 | 258 / 258 | 97% | 46.39 | 223 / 230 |
brain | 97% | 2999.61 | 2560 / 2642 | 100% | 83.73 | 705 / 705 |
pancreas | 96% | 1368.97 | 316 / 328 | 99% | 38.02 | 177 / 178 |
skin | 100% | 3131.41 | 1806 / 1809 | 92% | 29.52 | 432 / 472 |
lymph node | 0% | 0 | 0 / 0 | 100% | 34.78 | 29 / 29 |
muscle | 100% | 9527.62 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 1958.26 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 48.42 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 22.84 | 1 / 1 |
blood vessel | 100% | 3292.41 | 1334 / 1335 | 0% | 0 | 0 / 0 |
adipose | 100% | 4510.84 | 1203 / 1204 | 0% | 0 | 0 / 0 |
heart | 97% | 6922.63 | 836 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 90% | 3026.32 | 834 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 85% | 23.54 | 68 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0008150 | Biological process | biological_process |
GO_0005777 | Cellular component | peroxisome |
GO_0016020 | Cellular component | membrane |
GO_0005739 | Cellular component | mitochondrion |
GO_0016229 | Molecular function | steroid dehydrogenase activity |
GO_0003674 | Molecular function | molecular_function |
Gene name | HSDL2 |
Protein name | Hydroxysteroid dehydrogenase-like protein 2 (EC 1.-.-.-) (Short chain dehydrogenase/reductase family 13C member 1) |
Synonyms | C9orf99 SDR13C1 |
Description | FUNCTION: Has apparently no steroid dehydrogenase activity. . |
Accessions | Q6YN16 ENST00000398803.1 [Q6YN16-2] ENST00000398805.8 [Q6YN16-1] |