HILPDA report

Query

Invalid input gene. Please select from the suggestions.

I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
fibroblast	10 studies	25% ± 10%	Explore
adipocyte	10 studies	28% ± 10%	Explore
astrocyte	6 studies	30% ± 9%	Explore
epithelial cell	5 studies	35% ± 11%	Explore
abnormal cell	4 studies	33% ± 17%	Explore
basal cell	4 studies	22% ± 3%	Explore
ciliated cell	4 studies	25% ± 4%	Explore
extravillous trophoblast	3 studies	39% ± 9%	Explore
macrophage	3 studies	19% ± 2%	Explore
pericyte	3 studies	37% ± 14%	Explore
connective tissue cell	3 studies	28% ± 15%	Explore
endothelial cell	3 studies	19% ± 2%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
placenta	3 studies	27% ± 5%	Explore
lung	3 studies	21% ± 3%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
breast	93%	3757.51	429 / 459	98%	51.12	1099 / 1118
ovary	78%	2519.75	140 / 180	94%	25.81	405 / 430
bladder	76%	2527.14	16 / 21	96%	64.55	482 / 504
skin	90%	2139.20	1628 / 1809	74%	17.40	349 / 472
lung	65%	2952.61	377 / 578	83%	47.20	959 / 1155
brain	47%	1106.58	1231 / 2642	84%	40.54	591 / 705
uterus	34%	564.66	58 / 170	93%	50.36	428 / 459
kidney	49%	2119.61	44 / 89	78%	187.93	701 / 901
esophagus	56%	3816.72	807 / 1445	67%	20.77	123 / 183
intestine	28%	645.33	269 / 966	87%	38.64	457 / 527
stomach	33%	706.79	118 / 359	71%	30.82	203 / 286
ureter	0%	0	0 / 0	100%	57.06	1 / 1
adipose	99%	5778.04	1190 / 1204	0%	0	0 / 0
prostate	33%	718.45	81 / 245	65%	10.96	326 / 502
tonsil	0%	0	0 / 0	84%	32.40	38 / 45
pancreas	13%	204.97	42 / 328	70%	23.74	125 / 178
blood vessel	70%	3509.99	928 / 1335	0%	0	0 / 0
lymph node	0%	0	0 / 0	69%	19.52	20 / 29
thymus	42%	741.51	275 / 653	25%	4.40	152 / 605
peripheral blood	62%	7149.27	572 / 929	0%	0	0 / 0
liver	29%	1101.23	65 / 226	17%	4.80	68 / 406
heart	37%	1397.46	315 / 861	0%	0	0 / 0
adrenal gland	13%	253.68	33 / 258	13%	3.13	31 / 230
spleen	6%	235.64	15 / 241	0%	0	0 / 0
muscle	5%	69.64	37 / 803	0%	0	0 / 0
eye	0%	0	0 / 0	4%	0.50	3 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0