HHATL report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
astrocyte	10 studies	32% ± 11%	Explore
oligodendrocyte	9 studies	31% ± 11%	Explore
retinal bipolar neuron	4 studies	34% ± 13%	Explore
rod bipolar cell	3 studies	52% ± 15%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	3 studies	22% ± 4%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	90%	3963.82	2379 / 2642	92%	19.37	650 / 705
thymus	76%	1605.15	495 / 653	89%	39.74	537 / 605
muscle	100%	9889.68	803 / 803	0%	0	0 / 0
heart	99%	16364.67	850 / 861	0%	0	0 / 0
eye	0%	0	0 / 0	64%	112.49	51 / 80
skin	1%	12.64	17 / 1809	24%	33.78	114 / 472
kidney	0%	0	0 / 89	8%	8.34	72 / 901
adrenal gland	0%	7.82	1 / 258	7%	1.01	17 / 230
tonsil	0%	0	0 / 0	7%	0.33	3 / 45
prostate	2%	30.64	6 / 245	4%	0.26	19 / 502
uterus	1%	4.34	1 / 170	5%	3.36	24 / 459
pancreas	0%	0	0 / 328	4%	0.21	8 / 178
lung	0%	24.13	1 / 578	4%	0.67	42 / 1155
ovary	0%	0	0 / 180	3%	0.11	11 / 430
breast	1%	20.43	6 / 459	1%	0.05	9 / 1118
blood vessel	1%	52.26	17 / 1335	0%	0	0 / 0
bladder	0%	0	0 / 21	1%	0.13	6 / 504
liver	0%	0	0 / 226	1%	2.05	4 / 406
intestine	0%	0	0 / 966	0%	0.02	2 / 527
stomach	0%	0	0 / 359	0%	0.03	1 / 286
peripheral blood	0%	3.02	3 / 929	0%	0	0 / 0
adipose	0%	3.24	3 / 1204	0%	0	0 / 0
esophagus	0%	0.64	1 / 1445	0%	0	0 / 183
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
spleen	0%	0	0 / 241	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1