Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 17 studies | 29% ± 10% | |
fibroblast | 11 studies | 25% ± 9% | |
macrophage | 10 studies | 29% ± 14% | |
astrocyte | 10 studies | 28% ± 12% | |
glutamatergic neuron | 9 studies | 39% ± 25% | |
microglial cell | 9 studies | 24% ± 7% | |
myeloid cell | 8 studies | 22% ± 4% | |
pericyte | 7 studies | 22% ± 7% | |
GABAergic neuron | 7 studies | 43% ± 22% | |
oligodendrocyte | 7 studies | 25% ± 6% | |
oligodendrocyte precursor cell | 7 studies | 29% ± 13% | |
adipocyte | 6 studies | 22% ± 5% | |
dendritic cell | 6 studies | 29% ± 11% | |
type I pneumocyte | 6 studies | 21% ± 5% | |
type II pneumocyte | 6 studies | 20% ± 4% | |
smooth muscle cell | 6 studies | 22% ± 5% | |
amacrine cell | 5 studies | 24% ± 6% | |
epithelial cell | 5 studies | 35% ± 13% | |
endothelial cell of lymphatic vessel | 5 studies | 21% ± 3% | |
interneuron | 5 studies | 41% ± 23% | |
conventional dendritic cell | 4 studies | 22% ± 5% | |
cardiac muscle cell | 4 studies | 19% ± 1% | |
ciliated cell | 4 studies | 25% ± 5% | |
connective tissue cell | 4 studies | 18% ± 2% | |
basal cell | 4 studies | 30% ± 14% | |
neuron | 4 studies | 43% ± 10% | |
classical monocyte | 3 studies | 21% ± 3% | |
GABAergic interneuron | 3 studies | 24% ± 1% | |
myofibroblast cell | 3 studies | 23% ± 6% | |
retina horizontal cell | 3 studies | 16% ± 1% | |
lymphocyte | 3 studies | 21% ± 8% | |
monocyte | 3 studies | 26% ± 2% | |
goblet cell | 3 studies | 43% ± 27% | |
transit amplifying cell | 3 studies | 30% ± 21% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 6363.91 | 1445 / 1445 | 100% | 46.41 | 183 / 183 |
prostate | 100% | 7418.69 | 245 / 245 | 100% | 42.82 | 502 / 502 |
breast | 100% | 7693.20 | 459 / 459 | 100% | 57.25 | 1117 / 1118 |
skin | 100% | 7168.99 | 1809 / 1809 | 100% | 36.64 | 471 / 472 |
stomach | 100% | 4872.57 | 359 / 359 | 100% | 32.07 | 285 / 286 |
lung | 100% | 6650.76 | 578 / 578 | 100% | 46.77 | 1150 / 1155 |
pancreas | 100% | 4257.12 | 328 / 328 | 99% | 38.65 | 177 / 178 |
thymus | 100% | 7622.89 | 653 / 653 | 99% | 51.29 | 601 / 605 |
kidney | 100% | 4586.18 | 89 / 89 | 99% | 42.74 | 895 / 901 |
ovary | 100% | 9078.58 | 180 / 180 | 99% | 36.72 | 426 / 430 |
intestine | 100% | 6115.99 | 966 / 966 | 99% | 30.27 | 522 / 527 |
uterus | 100% | 8716.56 | 170 / 170 | 99% | 34.71 | 454 / 459 |
bladder | 100% | 6560.43 | 21 / 21 | 99% | 32.80 | 498 / 504 |
adrenal gland | 100% | 4850.60 | 258 / 258 | 97% | 26.57 | 224 / 230 |
brain | 97% | 3613.57 | 2564 / 2642 | 99% | 25.68 | 699 / 705 |
liver | 100% | 3085.92 | 226 / 226 | 92% | 22.27 | 375 / 406 |
adipose | 100% | 7930.23 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 6836.07 | 1335 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 26.73 | 80 / 80 |
spleen | 100% | 4663.37 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 37.63 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 35.84 | 1 / 1 |
heart | 99% | 3777.05 | 854 / 861 | 0% | 0 | 0 / 0 |
muscle | 97% | 2018.67 | 778 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 93% | 2584.38 | 868 / 929 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 69% | 9.96 | 20 / 29 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0051259 | Biological process | protein complex oligomerization |
GO_0030200 | Biological process | heparan sulfate proteoglycan catabolic process |
GO_0007041 | Biological process | lysosomal transport |
GO_0043202 | Cellular component | lysosomal lumen |
GO_0070821 | Cellular component | tertiary granule membrane |
GO_0035579 | Cellular component | specific granule membrane |
GO_0005886 | Cellular component | plasma membrane |
GO_0005765 | Cellular component | lysosomal membrane |
GO_0015019 | Molecular function | heparan-alpha-glucosaminide N-acetyltransferase activity |
GO_0016746 | Molecular function | acyltransferase activity |
Gene name | HGSNAT |
Protein name | Heparan-alpha-glucosaminide N-acetyltransferase HGSNAT protein Heparan-alpha-glucosaminide N-acetyltransferase (EC 2.3.1.78) (Transmembrane protein 76) |
Synonyms | TMEM76 |
Description | FUNCTION: Lysosomal acetyltransferase that acetylates the non-reducing terminal alpha-glucosamine residue of intralysosomal heparin or heparan sulfate, converting it into a substrate for luminal alpha-N-acetyl glucosaminidase. . |
Accessions | ENST00000520704.1 E5RJN0 E5RH11 E5RGH7 Q68CP4 ENST00000522082.5 ENST00000379644.9 [Q68CP4-2] E5RJC4 ENST00000524016.5 H0YAZ0 Q96ED6 Q8IVU6 ENST00000521576.1 ENST00000517319.1 |