HDC report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
mast cell	32 studies	55% ± 18%	Explore
granulocyte	3 studies	47% ± 19%	Explore

II. Expression across tissues

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
lung	96%	1513.20	553 / 578	62%	2.18	714 / 1155
stomach	96%	2262.48	345 / 359	36%	0.83	102 / 286
bladder	95%	856.10	20 / 21	29%	0.96	145 / 504
prostate	84%	607.93	207 / 245	35%	0.78	177 / 502
breast	71%	339.92	328 / 459	48%	10.75	539 / 1118
esophagus	81%	707.31	1177 / 1445	28%	0.66	51 / 183
uterus	77%	391.59	131 / 170	29%	0.90	135 / 459
intestine	72%	432.14	695 / 966	30%	0.70	160 / 527
adipose	86%	679.20	1032 / 1204	0%	0	0 / 0
kidney	36%	153.89	32 / 89	39%	1.12	355 / 901
pancreas	14%	31.58	47 / 328	60%	1.96	107 / 178
skin	64%	490.66	1162 / 1809	4%	0.08	20 / 472
liver	38%	82.44	86 / 226	17%	0.38	67 / 406
blood vessel	38%	138.88	512 / 1335	0%	0	0 / 0
peripheral blood	33%	136.15	306 / 929	0%	0	0 / 0
spleen	29%	86.42	71 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	24%	0.45	11 / 45
heart	23%	46.37	194 / 861	0%	0	0 / 0
ovary	11%	32.95	20 / 180	7%	0.30	30 / 430
thymus	11%	26.78	74 / 653	5%	0.16	33 / 605
brain	9%	843.41	232 / 2642	7%	0.27	48 / 705
adrenal gland	1%	1.21	2 / 258	12%	0.31	28 / 230
muscle	11%	21.98	88 / 803	0%	0	0 / 0
lymph node	0%	0	0 / 0	3%	0.08	1 / 29
eye	0%	0	0 / 0	1%	0.02	1 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1