Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 7 studies | 22% ± 5% | |
glutamatergic neuron | 6 studies | 43% ± 27% | |
oligodendrocyte | 5 studies | 24% ± 6% | |
astrocyte | 4 studies | 28% ± 7% | |
neuron | 3 studies | 26% ± 12% | |
retinal ganglion cell | 3 studies | 55% ± 18% | |
GABAergic neuron | 3 studies | 51% ± 17% | |
interneuron | 3 studies | 36% ± 24% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 6 studies | 36% ± 16% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 6455.62 | 2642 / 2642 | 100% | 48.51 | 705 / 705 |
kidney | 100% | 1882.76 | 89 / 89 | 97% | 18.90 | 872 / 901 |
thymus | 99% | 1476.19 | 647 / 653 | 97% | 15.70 | 588 / 605 |
prostate | 96% | 1280.52 | 236 / 245 | 97% | 9.37 | 487 / 502 |
skin | 86% | 1075.51 | 1562 / 1809 | 99% | 25.02 | 469 / 472 |
breast | 99% | 1732.37 | 456 / 459 | 82% | 6.86 | 917 / 1118 |
lung | 97% | 1157.53 | 559 / 578 | 81% | 6.65 | 941 / 1155 |
adrenal gland | 76% | 740.06 | 197 / 258 | 97% | 35.62 | 223 / 230 |
intestine | 81% | 1341.45 | 785 / 966 | 89% | 8.04 | 468 / 527 |
bladder | 90% | 1790.43 | 19 / 21 | 75% | 6.57 | 379 / 504 |
ovary | 100% | 1528.69 | 180 / 180 | 59% | 4.13 | 254 / 430 |
uterus | 97% | 1562.16 | 165 / 170 | 60% | 6.32 | 275 / 459 |
stomach | 64% | 882.76 | 230 / 359 | 85% | 8.17 | 244 / 286 |
esophagus | 71% | 1863.16 | 1022 / 1445 | 56% | 4.36 | 103 / 183 |
pancreas | 10% | 75.13 | 32 / 328 | 96% | 12.70 | 170 / 178 |
eye | 0% | 0 | 0 / 0 | 100% | 41.39 | 80 / 80 |
ureter | 0% | 0 | 0 / 0 | 100% | 10.06 | 1 / 1 |
blood vessel | 100% | 4300.23 | 1334 / 1335 | 0% | 0 | 0 / 0 |
adipose | 100% | 1863.14 | 1200 / 1204 | 0% | 0 | 0 / 0 |
liver | 15% | 116.45 | 35 / 226 | 79% | 8.55 | 320 / 406 |
heart | 93% | 1476.08 | 801 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 90% | 8.06 | 26 / 29 |
muscle | 82% | 871.57 | 659 / 803 | 0% | 0 | 0 / 0 |
spleen | 62% | 508.88 | 149 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 53% | 3.24 | 24 / 45 |
peripheral blood | 20% | 176.02 | 185 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0045948 | Biological process | positive regulation of translational initiation |
GO_0006397 | Biological process | mRNA processing |
GO_0071260 | Biological process | cellular response to mechanical stimulus |
GO_0033120 | Biological process | positive regulation of RNA splicing |
GO_0141014 | Biological process | ribosome hibernation |
GO_0030578 | Biological process | PML body organization |
GO_0008380 | Biological process | RNA splicing |
GO_0043392 | Biological process | negative regulation of DNA binding |
GO_0005730 | Cellular component | nucleolus |
GO_0016528 | Cellular component | sarcoplasm |
GO_0005576 | Cellular component | extracellular region |
GO_0016607 | Cellular component | nuclear speck |
GO_0030017 | Cellular component | sarcomere |
GO_0005829 | Cellular component | cytosol |
GO_0005737 | Cellular component | cytoplasm |
GO_0015030 | Cellular component | Cajal body |
GO_0097504 | Cellular component | Gemini of coiled bodies |
GO_0031965 | Cellular component | nuclear membrane |
GO_0010494 | Cellular component | cytoplasmic stress granule |
GO_0005634 | Cellular component | nucleus |
GO_0043022 | Molecular function | ribosome binding |
GO_0061770 | Molecular function | translation elongation factor binding |
GO_0032183 | Molecular function | SUMO binding |
GO_0003723 | Molecular function | RNA binding |
GO_0005515 | Molecular function | protein binding |
Gene name | HABP4 |
Protein name | Intracellular hyaluronan-binding protein 4 (IHABP-4) (IHABP4) (Hyaluronan-binding protein 4) (Ki-1/57 intracellular antigen) |
Synonyms | |
Description | FUNCTION: Ribosome-binding protein that promotes ribosome hibernation, a process during which ribosomes are stabilized in an inactive state and preserved from proteasomal degradation (By similarity). Acts via its association with EEF2/eEF2 factor at the A-site of the ribosome, promoting ribosome stabilization in an inactive state compatible with storage (By similarity). Plays a key role in ribosome hibernation in the mature oocyte by promoting ribosome stabilization (By similarity). Ribosomes, which are produced in large quantities during oogenesis, are stored and translationally repressed in the oocyte and early embryo (By similarity). Also binds RNA, regulating transcription and pre-mRNA splicing . Binds (via C-terminus) to poly(U) RNA . Seems to play a role in PML-nuclear bodies formation . Negatively regulates DNA-binding activity of the transcription factor MEF2C in myocardial cells in response to mechanical stress (By similarity). . |
Accessions | ENST00000375249.5 [Q5JVS0-1] ENST00000375251.7 [Q5JVS0-2] Q5JVS0 |