Name | Number of supported studies | Average coverage | |
---|---|---|---|
natural killer cell | 5 studies | 20% ± 5% | |
B cell | 3 studies | 17% ± 2% | |
non-classical monocyte | 3 studies | 24% ± 2% | |
CD16-negative, CD56-bright natural killer cell, human | 3 studies | 22% ± 5% | |
classical monocyte | 3 studies | 22% ± 6% | |
hematopoietic precursor cell | 3 studies | 30% ± 10% | |
plasmablast | 3 studies | 30% ± 3% | |
dendritic cell | 3 studies | 21% ± 4% | |
gamma-delta T cell | 3 studies | 22% ± 8% | |
plasmacytoid dendritic cell | 3 studies | 25% ± 6% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
peripheral blood | 3 studies | 20% ± 6% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
ovary | 100% | 50.84 | 180 / 180 | 98% | 12.63 | 420 / 430 |
prostate | 98% | 41.45 | 239 / 245 | 98% | 7.84 | 494 / 502 |
bladder | 100% | 32.57 | 21 / 21 | 93% | 19.14 | 471 / 504 |
uterus | 97% | 32.09 | 165 / 170 | 95% | 11.60 | 437 / 459 |
esophagus | 94% | 22.68 | 1353 / 1445 | 87% | 5.13 | 160 / 183 |
breast | 97% | 46.72 | 447 / 459 | 81% | 11.31 | 901 / 1118 |
lung | 97% | 54.68 | 560 / 578 | 80% | 9.10 | 921 / 1155 |
intestine | 95% | 35.48 | 917 / 966 | 80% | 8.78 | 424 / 527 |
stomach | 89% | 24.42 | 319 / 359 | 86% | 8.66 | 245 / 286 |
adrenal gland | 100% | 41.27 | 257 / 258 | 72% | 3.91 | 166 / 230 |
skin | 91% | 40.99 | 1646 / 1809 | 76% | 4.34 | 357 / 472 |
liver | 85% | 16.97 | 191 / 226 | 79% | 5.10 | 322 / 406 |
pancreas | 84% | 15.75 | 276 / 328 | 68% | 7.22 | 121 / 178 |
thymus | 94% | 24.62 | 613 / 653 | 50% | 5.14 | 300 / 605 |
kidney | 97% | 26.60 | 86 / 89 | 21% | 2.29 | 189 / 901 |
lymph node | 0% | 0 | 0 / 0 | 100% | 9.00 | 29 / 29 |
ureter | 0% | 0 | 0 / 0 | 100% | 3.86 | 1 / 1 |
peripheral blood | 100% | 157.35 | 926 / 929 | 0% | 0 | 0 / 0 |
spleen | 99% | 62.45 | 239 / 241 | 0% | 0 | 0 / 0 |
brain | 61% | 9.55 | 1620 / 2642 | 37% | 2.80 | 263 / 705 |
adipose | 97% | 39.59 | 1171 / 1204 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 96% | 5.90 | 43 / 45 |
blood vessel | 88% | 19.76 | 1171 / 1335 | 0% | 0 | 0 / 0 |
heart | 86% | 18.25 | 740 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 68% | 2.59 | 54 / 80 |
muscle | 38% | 4.38 | 302 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0008150 | Biological process | biological_process |
GO_0031507 | Biological process | heterochromatin formation |
GO_0070062 | Cellular component | extracellular exosome |
GO_0000786 | Cellular component | nucleosome |
GO_0005634 | Cellular component | nucleus |
GO_0046982 | Molecular function | protein heterodimerization activity |
GO_0031492 | Molecular function | nucleosomal DNA binding |
GO_0030527 | Molecular function | structural constituent of chromatin |
GO_0003674 | Molecular function | molecular_function |
Gene name | H2AC20 |
Protein name | Histone H2A type 2-C (H2A-clustered histone 20) (Histone H2A-GL101) (Histone H2A/q) |
Synonyms | H2AFQ HIST2H2AC |
Description | FUNCTION: Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. |
Accessions | Q16777 ENST00000331380.4 |