Name | Number of supported studies | Average coverage | |
---|---|---|---|
classical monocyte | 24 studies | 45% ± 14% | |
macrophage | 24 studies | 26% ± 10% | |
conventional dendritic cell | 22 studies | 30% ± 11% | |
non-classical monocyte | 22 studies | 30% ± 9% | |
monocyte | 19 studies | 37% ± 13% | |
neutrophil | 14 studies | 49% ± 19% | |
dendritic cell | 12 studies | 33% ± 20% | |
oligodendrocyte | 8 studies | 28% ± 8% | |
alveolar macrophage | 7 studies | 29% ± 12% | |
myeloid cell | 7 studies | 36% ± 16% | |
microglial cell | 7 studies | 26% ± 8% | |
mesothelial cell | 6 studies | 28% ± 15% | |
B cell | 6 studies | 18% ± 2% | |
mononuclear phagocyte | 4 studies | 33% ± 14% | |
epithelial cell | 4 studies | 35% ± 15% | |
endothelial cell | 4 studies | 22% ± 4% | |
naive B cell | 4 studies | 19% ± 2% | |
intermediate monocyte | 4 studies | 40% ± 19% | |
plasmacytoid dendritic cell | 4 studies | 21% ± 4% | |
hematopoietic precursor cell | 3 studies | 28% ± 3% | |
common myeloid progenitor | 3 studies | 27% ± 8% | |
ciliated cell | 3 studies | 22% ± 3% | |
GABAergic neuron | 3 studies | 28% ± 8% | |
glutamatergic neuron | 3 studies | 43% ± 10% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
stomach | 100% | 1086.74 | 359 / 359 | 100% | 16.38 | 286 / 286 |
thymus | 100% | 1027.57 | 653 / 653 | 99% | 14.97 | 601 / 605 |
pancreas | 100% | 972.66 | 327 / 328 | 99% | 16.63 | 177 / 178 |
lung | 100% | 2593.37 | 576 / 578 | 99% | 17.89 | 1148 / 1155 |
prostate | 100% | 765.52 | 244 / 245 | 99% | 15.81 | 498 / 502 |
brain | 100% | 1319.48 | 2629 / 2642 | 99% | 15.73 | 697 / 705 |
kidney | 100% | 1116.28 | 89 / 89 | 98% | 13.67 | 886 / 901 |
breast | 100% | 1100.64 | 459 / 459 | 98% | 14.70 | 1099 / 1118 |
intestine | 99% | 848.40 | 953 / 966 | 99% | 16.18 | 523 / 527 |
ovary | 97% | 561.32 | 174 / 180 | 100% | 18.45 | 430 / 430 |
bladder | 100% | 619.24 | 21 / 21 | 96% | 14.86 | 485 / 504 |
uterus | 99% | 655.12 | 168 / 170 | 97% | 13.33 | 447 / 459 |
esophagus | 99% | 632.08 | 1425 / 1445 | 97% | 12.83 | 177 / 183 |
adrenal gland | 100% | 902.46 | 257 / 258 | 96% | 9.77 | 220 / 230 |
skin | 70% | 354.46 | 1270 / 1809 | 88% | 9.10 | 417 / 472 |
liver | 88% | 551.55 | 200 / 226 | 70% | 6.65 | 284 / 406 |
adipose | 100% | 1527.39 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 21.44 | 29 / 29 |
peripheral blood | 100% | 24017.62 | 929 / 929 | 0% | 0 | 0 / 0 |
spleen | 100% | 6904.29 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 11.33 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 7.52 | 1 / 1 |
blood vessel | 100% | 1092.07 | 1332 / 1335 | 0% | 0 | 0 / 0 |
heart | 81% | 408.33 | 697 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 38% | 2.36 | 30 / 80 |
muscle | 16% | 51.18 | 126 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0061025 | Biological process | membrane fusion |
GO_0035578 | Cellular component | azurophil granule lumen |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005829 | Cellular component | cytosol |
GO_0005576 | Cellular component | extracellular region |
GO_0005886 | Cellular component | plasma membrane |
GO_0005737 | Cellular component | cytoplasm |
GO_0046982 | Molecular function | protein heterodimerization activity |
GO_0042803 | Molecular function | protein homodimerization activity |
GO_0005509 | Molecular function | calcium ion binding |
GO_0005515 | Molecular function | protein binding |
Gene name | GCA |
Protein name | Grancalcin |
Synonyms | GCL |
Description | FUNCTION: Calcium-binding protein that may play a role in the adhesion of neutrophils to fibronectin. May play a role in the formation of focal adhesions. |
Accessions | H7C2Z6 ENST00000233612.8 ENST00000446271.5 C9JWQ8 P28676 C9JIZ3 ENST00000437150.7 ENST00000453113.6 H7BXD5 ENST00000414723.1 C9JV47 ENST00000429691.6 |