Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 37 studies | 40% ± 19% | |
endothelial cell of lymphatic vessel | 14 studies | 41% ± 21% | |
astrocyte | 12 studies | 44% ± 19% | |
capillary endothelial cell | 12 studies | 44% ± 22% | |
glutamatergic neuron | 10 studies | 47% ± 21% | |
endothelial cell of artery | 8 studies | 27% ± 7% | |
GABAergic neuron | 7 studies | 50% ± 22% | |
type I pneumocyte | 7 studies | 42% ± 14% | |
smooth muscle cell | 6 studies | 29% ± 8% | |
interneuron | 6 studies | 49% ± 18% | |
vein endothelial cell | 6 studies | 42% ± 24% | |
pericyte | 5 studies | 36% ± 20% | |
endothelial cell of vascular tree | 5 studies | 39% ± 23% | |
granule cell | 4 studies | 46% ± 24% | |
mesothelial cell | 4 studies | 36% ± 7% | |
ciliated cell | 4 studies | 27% ± 10% | |
cholangiocyte | 3 studies | 50% ± 24% | |
neuron | 3 studies | 24% ± 5% | |
GABAergic interneuron | 3 studies | 35% ± 12% | |
myofibroblast cell | 3 studies | 23% ± 0% | |
Mueller cell | 3 studies | 30% ± 2% | |
epithelial cell | 3 studies | 32% ± 17% | |
kidney loop of Henle epithelial cell | 3 studies | 37% ± 12% | |
renal principal cell | 3 studies | 30% ± 3% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
thymus | 100% | 5363.91 | 653 / 653 | 99% | 61.89 | 598 / 605 |
prostate | 99% | 1607.42 | 243 / 245 | 96% | 29.82 | 482 / 502 |
brain | 97% | 1603.27 | 2571 / 2642 | 98% | 23.15 | 690 / 705 |
breast | 100% | 1880.55 | 457 / 459 | 92% | 17.53 | 1030 / 1118 |
lung | 100% | 6096.44 | 578 / 578 | 90% | 27.97 | 1039 / 1155 |
kidney | 100% | 1943.09 | 89 / 89 | 89% | 36.63 | 801 / 901 |
uterus | 100% | 2378.53 | 170 / 170 | 79% | 16.56 | 361 / 459 |
esophagus | 97% | 1567.27 | 1396 / 1445 | 75% | 18.57 | 138 / 183 |
bladder | 100% | 1388.48 | 21 / 21 | 68% | 12.19 | 344 / 504 |
intestine | 97% | 1984.46 | 940 / 966 | 61% | 9.94 | 322 / 527 |
pancreas | 60% | 374.91 | 198 / 328 | 96% | 18.39 | 170 / 178 |
liver | 72% | 591.92 | 162 / 226 | 71% | 19.22 | 289 / 406 |
skin | 73% | 1019.52 | 1323 / 1809 | 68% | 14.09 | 323 / 472 |
stomach | 80% | 582.78 | 286 / 359 | 61% | 8.92 | 174 / 286 |
adrenal gland | 45% | 293.25 | 117 / 258 | 86% | 39.88 | 197 / 230 |
ovary | 62% | 447.69 | 111 / 180 | 59% | 7.68 | 253 / 430 |
heart | 100% | 1603.49 | 859 / 861 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 2544.70 | 1331 / 1335 | 0% | 0 | 0 / 0 |
adipose | 100% | 2084.55 | 1199 / 1204 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 87% | 28.45 | 39 / 45 |
muscle | 76% | 656.93 | 609 / 803 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 56% | 12.07 | 45 / 80 |
spleen | 49% | 284.29 | 118 / 241 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 14% | 1.13 | 4 / 29 |
peripheral blood | 14% | 138.33 | 126 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0006493 | Biological process | protein O-linked glycosylation |
GO_0005575 | Cellular component | cellular_component |
GO_0000139 | Cellular component | Golgi membrane |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0004653 | Molecular function | polypeptide N-acetylgalactosaminyltransferase activity |
GO_0030246 | Molecular function | carbohydrate binding |
GO_0046872 | Molecular function | metal ion binding |
Gene name | GALNT18 |
Protein name | Polypeptide N-acetylgalactosaminyltransferase (EC 2.4.1.-) (Protein-UDP acetylgalactosaminyltransferase) Polypeptide N-acetylgalactosaminyltransferase 18 (EC 2.4.1.41) (Polypeptide GalNAc transferase 18) (GalNAc-T18) (Polypeptide GalNAc transferase-like protein 4) (GalNAc-T-like protein 4) (pp-GaNTase-like protein 4) (Polypeptide N-acetylgalactosaminyltransferase-like protein 4) (Protein-UDP acetylgalactosaminyltransferase-like protein 4) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase-like protein 4) |
Synonyms | hCG_1991780 GALNTL4 GalNAc-T18 |
Description | FUNCTION: Catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine (GalNAc) residue from UDP-GalNAc to a serine or threonine residue on the protein receptor. . |
Accessions | Q6P9A2 Q58A54 ENST00000227756.5 [Q6P9A2-1] |