Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 12 studies | 38% ± 18% | |
glutamatergic neuron | 7 studies | 32% ± 19% | |
endothelial cell | 6 studies | 30% ± 15% | |
oligodendrocyte precursor cell | 6 studies | 35% ± 15% | |
GABAergic neuron | 5 studies | 34% ± 20% | |
interneuron | 5 studies | 44% ± 24% | |
neuron | 5 studies | 25% ± 5% | |
retinal ganglion cell | 4 studies | 50% ± 24% | |
fibroblast | 4 studies | 23% ± 7% | |
pericyte | 4 studies | 23% ± 7% | |
granule cell | 3 studies | 27% ± 5% | |
amacrine cell | 3 studies | 23% ± 5% | |
smooth muscle cell | 3 studies | 20% ± 2% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 7 studies | 34% ± 18% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 30007.47 | 2630 / 2642 | 100% | 194.92 | 704 / 705 |
prostate | 100% | 12955.36 | 244 / 245 | 95% | 13.53 | 476 / 502 |
breast | 99% | 8160.02 | 453 / 459 | 90% | 13.55 | 1003 / 1118 |
skin | 93% | 5090.30 | 1687 / 1809 | 93% | 16.39 | 440 / 472 |
adrenal gland | 97% | 5980.17 | 250 / 258 | 88% | 18.80 | 202 / 230 |
thymus | 100% | 8964.18 | 650 / 653 | 79% | 7.56 | 475 / 605 |
esophagus | 95% | 9729.94 | 1375 / 1445 | 79% | 8.92 | 145 / 183 |
uterus | 100% | 19074.96 | 170 / 170 | 74% | 10.47 | 338 / 459 |
lung | 98% | 7795.88 | 569 / 578 | 73% | 9.33 | 838 / 1155 |
ovary | 100% | 14865.44 | 180 / 180 | 61% | 8.33 | 264 / 430 |
bladder | 100% | 9362.57 | 21 / 21 | 61% | 7.80 | 306 / 504 |
kidney | 92% | 5458.88 | 82 / 89 | 63% | 8.55 | 572 / 901 |
intestine | 96% | 9213.32 | 930 / 966 | 58% | 5.67 | 304 / 527 |
stomach | 76% | 4988.02 | 274 / 359 | 49% | 4.57 | 139 / 286 |
pancreas | 26% | 939.78 | 86 / 328 | 90% | 12.32 | 161 / 178 |
spleen | 100% | 14570.37 | 241 / 241 | 0% | 0 | 0 / 0 |
blood vessel | 99% | 9651.34 | 1322 / 1335 | 0% | 0 | 0 / 0 |
adipose | 98% | 6875.58 | 1177 / 1204 | 0% | 0 | 0 / 0 |
heart | 89% | 4981.91 | 764 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 85% | 12.02 | 68 / 80 |
tonsil | 0% | 0 | 0 / 0 | 56% | 4.77 | 25 / 45 |
lymph node | 0% | 0 | 0 / 0 | 55% | 5.03 | 16 / 29 |
peripheral blood | 50% | 2457.82 | 461 / 929 | 0% | 0 | 0 / 0 |
liver | 4% | 119.13 | 8 / 226 | 16% | 3.28 | 64 / 406 |
muscle | 5% | 189.50 | 44 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0060124 | Biological process | positive regulation of growth hormone secretion |
GO_0008285 | Biological process | negative regulation of cell population proliferation |
GO_0033602 | Biological process | negative regulation of dopamine secretion |
GO_0014049 | Biological process | positive regulation of glutamate secretion |
GO_0001649 | Biological process | osteoblast differentiation |
GO_0050805 | Biological process | negative regulation of synaptic transmission |
GO_0045471 | Biological process | response to ethanol |
GO_0099505 | Biological process | regulation of presynaptic membrane potential |
GO_0007193 | Biological process | adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway |
GO_0035094 | Biological process | response to nicotine |
GO_0060078 | Biological process | regulation of postsynaptic membrane potential |
GO_0051932 | Biological process | synaptic transmission, GABAergic |
GO_0007214 | Biological process | gamma-aminobutyric acid signaling pathway |
GO_0032811 | Biological process | negative regulation of epinephrine secretion |
GO_0014053 | Biological process | negative regulation of gamma-aminobutyric acid secretion |
GO_0150099 | Biological process | neuron-glial cell signaling |
GO_0098978 | Cellular component | glutamatergic synapse |
GO_0005615 | Cellular component | extracellular space |
GO_0098685 | Cellular component | Schaffer collateral - CA1 synapse |
GO_1902712 | Cellular component | G protein-coupled GABA receptor complex |
GO_0005886 | Cellular component | plasma membrane |
GO_0043197 | Cellular component | dendritic spine |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0043198 | Cellular component | dendritic shaft |
GO_0031966 | Cellular component | mitochondrial membrane |
GO_0043025 | Cellular component | neuronal cell body |
GO_0042734 | Cellular component | presynaptic membrane |
GO_0098982 | Cellular component | GABA-ergic synapse |
GO_0030673 | Cellular component | axolemma |
GO_0008021 | Cellular component | synaptic vesicle |
GO_0045211 | Cellular component | postsynaptic membrane |
GO_0038039 | Cellular component | G protein-coupled receptor heterodimeric complex |
GO_1990430 | Molecular function | extracellular matrix protein binding |
GO_0099579 | Molecular function | G protein-coupled neurotransmitter receptor activity involved in regulation of postsynaptic membrane potential |
GO_0150047 | Molecular function | G protein-coupled neurotransmitter receptor activity involved in regulation of presynaptic membrane potential |
GO_0046982 | Molecular function | protein heterodimerization activity |
GO_0004965 | Molecular function | G protein-coupled GABA receptor activity |
GO_0005515 | Molecular function | protein binding |
Gene name | GABBR1 |
Protein name | Gamma-aminobutyric acid type B receptor subunit 1 (GABA-B receptor 1) (GABA-B-R1) (GABA-BR1) (GABABR1) (Gb1) Gamma-aminobutyric acid type B receptor subunit 1 Gamma-aminobutyric acid (GABA) B receptor, 1 GABBR1 (Gamma-aminobutyric acid type B receptor subunit 1) Gamma-aminobutyric acid (GABA) B receptor, 1, isoform CRA_h (cDNA FLJ77697, highly similar to Homo sapiens gamma-aminobutyric acid (GABA) B receptor, 1 (GABBR1), transcript variant 2, mRNA) (cDNA, FLJ92613, Homo sapiens gamma-aminobutyric acid (GABA) B receptor, 1 (GABBR1),transcript variant 2, mRNA) |
Synonyms | hCG_22364 GPRC3A |
Description | FUNCTION: Component of a heterodimeric G-protein coupled receptor for GABA, formed by GABBR1 and GABBR2 . Within the heterodimeric GABA receptor, only GABBR1 seems to bind agonists, while GABBR2 mediates coupling to G proteins . Ligand binding causes a conformation change that triggers signaling via guanine nucleotide-binding proteins (G proteins) and modulates the activity of down-stream effectors, such as adenylate cyclase . Signaling inhibits adenylate cyclase, stimulates phospholipase A2, activates potassium channels, inactivates voltage-dependent calcium-channels and modulates inositol phospholipid hydrolysis . Calcium is required for high affinity binding to GABA (By similarity). Plays a critical role in the fine-tuning of inhibitory synaptic transmission . Pre-synaptic GABA receptor inhibits neurotransmitter release by down-regulating high-voltage activated calcium channels, whereas postsynaptic GABA receptor decreases neuronal excitability by activating a prominent inwardly rectifying potassium (Kir) conductance that underlies the late inhibitory postsynaptic potentials . Not only implicated in synaptic inhibition but also in hippocampal long-term potentiation, slow wave sleep, muscle relaxation and antinociception (Probable). Activated by (-)-baclofen, cgp27492 and blocked by phaclofen . .; FUNCTION: Isoform 1E may regulate the formation of functional GABBR1/GABBR2 heterodimers by competing for GABBR2 binding. This could explain the observation that certain small molecule ligands exhibit differential affinity for central versus peripheral sites. |
Accessions | ENST00000458612.6 [Q9UBS5-2] ENST00000440316.6 ENST00000419674.5 [Q9UBS5-3] ENST00000383639.6 [Q9UBS5-2] ENST00000476670.3 ENST00000551140.2 [Q9UBS5-5] ENST00000423604.6 [Q9UBS5-1] ENST00000383543.7 [Q9UBS5-2] C9J342 ENST00000439457.5 [Q9UBS5-1] ENST00000546913.2 [Q9UBS5-1] ENST00000355973.7 [Q9UBS5-2] ENST00000448754.5 [Q9UBS5-2] ENST00000551423.2 [Q9UBS5-5] ENST00000446436.6 [Q9UBS5-2] ENST00000452300.6 [Q9UBS5-2] ENST00000494877.5 [Q9UBS5-5] ENST00000548767.2 [Q9UBS5-5] ENST00000418225.6 ENST00000472823.5 ENST00000383537.8 [Q9UBS5-2] ENST00000443440.6 [Q9UBS5-3] ENST00000552399.2 [Q9UBS5-5] ENST00000377016.8 [Q9UBS5-3] F8WAS6 ENST00000377012.9 [Q9UBS5-2] Q9UBS5 ENST00000434660.6 [Q9UBS5-3] ENST00000449163.5 [Q9UBS5-2] ENST00000462632.6 ENST00000706533.1 [Q9UBS5-1] ENST00000550820.2 ENST00000377034.9 [Q9UBS5-1] A0A140TA42 A0A0G2JKF9 ENST00000417759.5 [Q9UBS5-2] C9JZG6 ENST00000489385.5 ENST00000383638.8 [Q9UBS5-1] ENST00000491829.5 ENST00000438094.5 [Q9UBS5-2] Q8IW08 ENST00000462632.6 [Q9UBS5-1] ENST00000383636.8 [Q9UBS5-2] ENST00000425097.6 [Q9UBS5-1] A0A140T9S4 ENST00000383541.8 [Q9UBS5-3] Q5SUJ9 ENST00000485508.5 F8WDC0 ENST00000383542.8 [Q9UBS5-1] F8WF38 F8WAV2 ENST00000414980.6 [Q9UBS5-2] ENST00000547410.5 [Q9UBS5-5] ENST00000383637.8 [Q9UBS5-3] |