I. Expression across cell types
Name | Number of supported studies  | Average coverage | |
|---|---|---|---|
| ciliated cell | 4 studies | 22% ± 6% | |
| GABAergic neuron | 3 studies | 23% ± 4% | |
| glutamatergic neuron | 3 studies | 30% ± 7% | |
| astrocyte | 3 studies | 16% ± 1% |
Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| ciliated cell | 4 studies | 22% ± 6% | |
| GABAergic neuron | 3 studies | 23% ± 4% | |
| glutamatergic neuron | 3 studies | 30% ± 7% | |
| astrocyte | 3 studies | 16% ± 1% |
Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| brain | 4 studies | 22% ± 5% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| esophagus | 100% | 1870.97 | 1445 / 1445 | 100% | 25.04 | 183 / 183 |
| lung | 100% | 1609.42 | 578 / 578 | 100% | 31.74 | 1155 / 1155 |
| ovary | 100% | 2150.13 | 180 / 180 | 100% | 22.10 | 430 / 430 |
| breast | 100% | 1911.93 | 459 / 459 | 100% | 34.22 | 1116 / 1118 |
| intestine | 100% | 1671.44 | 966 / 966 | 100% | 25.68 | 526 / 527 |
| brain | 100% | 1044.75 | 2635 / 2642 | 100% | 27.70 | 705 / 705 |
| stomach | 100% | 1284.99 | 359 / 359 | 100% | 22.89 | 285 / 286 |
| prostate | 100% | 1717.30 | 245 / 245 | 100% | 28.03 | 500 / 502 |
| bladder | 100% | 1946.62 | 21 / 21 | 99% | 29.97 | 501 / 504 |
| uterus | 100% | 1894.06 | 170 / 170 | 99% | 35.84 | 456 / 459 |
| thymus | 100% | 2252.42 | 653 / 653 | 99% | 35.06 | 600 / 605 |
| pancreas | 99% | 853.44 | 326 / 328 | 99% | 28.75 | 176 / 178 |
| kidney | 100% | 1326.69 | 89 / 89 | 98% | 22.36 | 880 / 901 |
| skin | 100% | 2337.77 | 1809 / 1809 | 97% | 27.56 | 459 / 472 |
| liver | 100% | 1077.44 | 226 / 226 | 95% | 14.55 | 387 / 406 |
| adrenal gland | 100% | 1827.87 | 258 / 258 | 92% | 18.81 | 211 / 230 |
| adipose | 100% | 1905.64 | 1204 / 1204 | 0% | 0 | 0 / 0 |
| blood vessel | 100% | 2074.79 | 1335 / 1335 | 0% | 0 | 0 / 0 |
| lymph node | 0% | 0 | 0 / 0 | 100% | 33.99 | 29 / 29 |
| spleen | 100% | 1537.88 | 241 / 241 | 0% | 0 | 0 / 0 |
| tonsil | 0% | 0 | 0 / 0 | 100% | 36.30 | 45 / 45 |
| ureter | 0% | 0 | 0 / 0 | 100% | 11.56 | 1 / 1 |
| muscle | 100% | 1230.02 | 802 / 803 | 0% | 0 | 0 / 0 |
| heart | 99% | 1205.48 | 854 / 861 | 0% | 0 | 0 / 0 |
| eye | 0% | 0 | 0 / 0 | 91% | 13.97 | 73 / 80 |
| peripheral blood | 91% | 1271.12 | 842 / 929 | 0% | 0 | 0 / 0 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| GO_0006364 | Biological process | rRNA processing |
| GO_0042274 | Biological process | ribosomal small subunit biogenesis |
| GO_0005730 | Cellular component | nucleolus |
| GO_0005654 | Cellular component | nucleoplasm |
| GO_0032040 | Cellular component | small-subunit processome |
| GO_0005515 | Molecular function | protein binding |
| GO_0003723 | Molecular function | RNA binding |
| Gene name | FCF1 |
| Protein name | FCF1 rRNA-processing protein FCF1 protein Chromosome 14 open reading frame 111, isoform CRA_a (FCF1 rRNA-processing protein) rRNA-processing protein FCF1 homolog |
| Synonyms | C14orf111 hCG_22352 CGI-35 |
| Description | FUNCTION: Part of the small subunit (SSU) processome, first precursor of the small eukaryotic ribosomal subunit. During the assembly of the SSU processome in the nucleolus, many ribosome biogenesis factors, an RNA chaperone and ribosomal proteins associate with the nascent pre-rRNA and work in concert to generate RNA folding, modifications, rearrangements and cleavage as well as targeted degradation of pre-ribosomal RNA by the RNA exosome. . |
| Accessions | G3V5L8 ENST00000553673.1 ENST00000554064.5 ENST00000534938.6 ENST00000554590.5 ENST00000341162.8 Q66K47 Q9Y324 G3V3N8 ENST00000556814.5 G3V5S9 G3V2M5 G3V1S4 G3V5D2 ENST00000553615.5 |
