Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 8 studies | 26% ± 11% | |
type I pneumocyte | 8 studies | 25% ± 8% | |
epithelial cell | 6 studies | 44% ± 16% | |
basal cell | 6 studies | 32% ± 17% | |
club cell | 6 studies | 24% ± 10% | |
type II pneumocyte | 6 studies | 26% ± 8% | |
goblet cell | 6 studies | 40% ± 21% | |
respiratory goblet cell | 4 studies | 27% ± 10% | |
squamous epithelial cell | 3 studies | 37% ± 17% | |
transit amplifying cell | 3 studies | 38% ± 30% | |
mucus secreting cell | 3 studies | 23% ± 6% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
lung | 4 studies | 17% ± 2% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
pancreas | 100% | 3746.15 | 328 / 328 | 94% | 61.19 | 167 / 178 |
thymus | 99% | 2527.66 | 649 / 653 | 91% | 52.80 | 552 / 605 |
prostate | 86% | 2164.73 | 210 / 245 | 100% | 87.80 | 500 / 502 |
stomach | 74% | 2981.89 | 267 / 359 | 97% | 100.38 | 278 / 286 |
lung | 72% | 1476.44 | 419 / 578 | 99% | 93.01 | 1138 / 1155 |
breast | 54% | 1115.56 | 248 / 459 | 99% | 127.37 | 1109 / 1118 |
intestine | 44% | 2353.20 | 424 / 966 | 98% | 103.00 | 518 / 527 |
esophagus | 38% | 3884.98 | 556 / 1445 | 99% | 125.45 | 181 / 183 |
bladder | 38% | 1064.38 | 8 / 21 | 96% | 101.23 | 484 / 504 |
skin | 72% | 6592.55 | 1305 / 1809 | 47% | 16.88 | 222 / 472 |
tonsil | 0% | 0 | 0 / 0 | 100% | 99.54 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 81.20 | 1 / 1 |
ovary | 0% | 0 | 0 / 180 | 99% | 102.31 | 424 / 430 |
uterus | 5% | 160.14 | 9 / 170 | 87% | 83.07 | 398 / 459 |
kidney | 57% | 722.79 | 51 / 89 | 16% | 5.01 | 142 / 901 |
eye | 0% | 0 | 0 / 0 | 24% | 4.95 | 19 / 80 |
liver | 0% | 0 | 0 / 226 | 17% | 9.72 | 68 / 406 |
adipose | 1% | 16.45 | 8 / 1204 | 0% | 0 | 0 / 0 |
adrenal gland | 0% | 0 | 0 / 258 | 0% | 0.19 | 1 / 230 |
muscle | 0% | 1.52 | 1 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 1.33 | 1 / 929 | 0% | 0 | 0 / 0 |
blood vessel | 0% | 3.90 | 1 / 1335 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
brain | 0% | 0 | 0 / 2642 | 0% | 0 | 0 / 705 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
heart | 0% | 0 | 0 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spleen | 0% | 0 | 0 / 241 | 0% | 0 | 0 / 0 |
GO_0042669 | Biological process | regulation of inner ear auditory receptor cell fate specification |
GO_0043484 | Biological process | regulation of RNA splicing |
GO_0008380 | Biological process | RNA splicing |
GO_0006397 | Biological process | mRNA processing |
GO_0005654 | Cellular component | nucleoplasm |
GO_1990904 | Cellular component | ribonucleoprotein complex |
GO_0016604 | Cellular component | nuclear body |
GO_0005634 | Cellular component | nucleus |
GO_0005515 | Molecular function | protein binding |
GO_0003729 | Molecular function | mRNA binding |
Gene name | ESRP1 |
Protein name | Epithelial splicing regulatory protein 1 (RNA-binding motif protein 35A) (RNA-binding protein 35A) Epithelial splicing regulatory protein 1 |
Synonyms | RBM35A |
Description | FUNCTION: mRNA splicing factor that regulates the formation of epithelial cell-specific isoforms. Specifically regulates the expression of FGFR2-IIIb, an epithelial cell-specific isoform of FGFR2. Also regulates the splicing of CD44, CTNND1, ENAH, 3 transcripts that undergo changes in splicing during the epithelial-to-mesenchymal transition (EMT). Acts by directly binding specific sequences in mRNAs. Binds the GU-rich sequence motifs in the ISE/ISS-3, a cis-element regulatory region present in the mRNA of FGFR2 . Regulates splicing and expression of genes involved in inner ear development, auditory hair cell differentiation, and cell fate specification in the cochlear epithelium (By similarity). . |
Accessions | ENST00000454170.7 ENST00000519505.5 H0YBR2 ENST00000358397.9 [Q6NXG1-3] A0A2U3TZN9 E5RI26 H0YBB3 ENST00000423620.6 [Q6NXG1-5] ENST00000433389.8 [Q6NXG1-1] ENST00000517610.1 Q6NXG1 ENST00000522756.6 ENST00000646773.1 [Q6NXG1-2] |